BAC Information

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BAC

Clone NameMSMg01-048M16
Chromosome3 (Build37)
Map Location 74,283,090 - 74,283,515
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425, LOC619764, LOC667434
Downstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048M16.T7 (MSMg01no048_m16.b1)MSMg01-048M16.TJ (MSMg01no048_m16.g1)
ACCAG278465AG278466
length1,2711,265
length of high quality
(start - end)		691 (38 - 728)559 (84 - 642)
definitionCHROMAT_FILE: MSMg01no048_m16.b1 PHD_FILE: MSMg01no048_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:07 2005CHROMAT_FILE: MSMg01no048_m16.g1 PHD_FILE: MSMg01no048_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATTATTTNNNACATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCG
GAATTCTCCAGTCTTTCTTTTGCCCTTAAAAAAAATTATTGCAGCTTTTG
AAGTTTTTGAGTTCCTAGAACCTGGACAACCCCTCAAAGCCTTTATTTCT
ATAAAATTTTTATTATTCAAACACACATGCACATGTGTGCAAATGCACAC
GTGCACATACACACTCATAATATATATGTATATCTCTATCATCTATCTAT
CTATCTATCTACTCTAGTGGAACTTTTTTGGAAGAAATAGGTGTGGACTT
GTTGAAGGAGGTGTGTAGGAGGTGTACTACTGGGGCTGAGATCTAAAGTT
TCAAAAGACTCCTGCTCTTCCCAGTGTTCCCACTCTCTGCCCCCTACTTA
AGGATCAATATGTGAGCTTTTAGCTACTCCAGTTAACATGCCTACTGCTT
GCTGCCATGCTGTTGATACATGTGATGAACTCAACCCTCAGAAATTTAAA
TCATAGTAAATGCTTTATTTTTTAAGTTTACATGTTGTTTTATAATAGCA
CAACAATACACATATAAGCAAACTATTCAAAATAAGAATTTAGTATGAGA
ACATAAATACTCAGCATCTATTGAGAGATTAAATAAAATAAAAATATTAT
TTAAAATCCAAATTGATAATGACAAGTGCTTGAATACATATAGAGAACAA
AATTTGAAACCACCAAAAGTAAACATGGTTGTGCACATACATACCTACAT
GAACAGCTGCATTATAAGCTTAATATAAAATAGTATGGATTGCTATATGT
GGATAGTGCATTCCTTTAATTCCAGACATTAAAACGCATATTCATGGTAT
ATCACTCTGACCTCTATTAAATCTTGTTCTAAGTATTGAGTTTCAATACA
TTCAAGGCTGCATAAATAAAATTCTACTTAAAATACCAATACAAAAATCT
ATTCCTAATTTTTAACCCCATATTATTATGTTTTATATATGTTTCTTTTT
CTCTCTCATATAAAAATCTTATTTCAATTTTTTTTTATTTTTCTAAAATG
TTCAATAATTCTTCTAATATTATTTTTTTAGTTTCTTATAAATCTCTTCT
TACTTATCCATTCATTATATTTCTTCCCTATTTCTTCTTTTAATGTTTTT
ATCTTTTCTTTTTCTCTATTAATTTCTTCTAACTTTCTATATGTCTTCTT
TTTTATTTCTACATCATTTATACTGTTTTCTTCTCTTTATCTCTTATTAT
CTTCATTTTTTCAATTTTATT

GAATTTTTTTNNTAACAGTGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAAAAAATATCTCCAATGGATT
GGCCTGTAAGCCAAATGCCGATGCATTTTCTTGACCAGATTGATGTTATT
GGGAACCACACTATGAGGAAGATGCTACCTCTGAACAAGTTGCATAAAAA
AAATTAAGGAAGCCAAGAGGTACTCTTATAGAAGAATAGGAGGAAGGATT
TCAGGCCCCAAAGGAGATAGCAACTGTACAAGACCAACAGAATCAATTAA
CCTGGACCATTTGTGGTTCTCAGTGTTTGAACCAGAAACCAAAGAACATT
CACACACTGGACCTAGACCTCCATGCACATATGTAGCAGATGCACAGACT
GTCTTCATGTGGGTCCCAAACAACTGGAATGGGTTATCCCAAAACCTTTC
ACCTATATGTAGAATTTGTTCTTCTGGCTGAGCTGCCTTGTCTGGCCTCA
CTGGGAGAGGTAGCACCTAGCCTTGAAGAGACTTGAAGTGCTAGGGTAGC
GGAATACGGGGGTGGGGGTGCTATTGGAAAAGGTGAGGCTGCAGAGGGAA
AAGATTATGGAAGGAGATGACCTATAATGGGGAGTGAGCTGCATATAAAG
TACAATAAGTAAAAAAAAAAAGATTAAATAATATGAATCCCCACATCTGA
AAAATAGAAATCAATCTGAACAAGCAAAAACCAACCTAAACAAAACAAAA
ACAAACTACCTCCACAAAAACCAAAAAACAAAAATTTCAACACATGAGGC
ATAAGCCCGTAAACACTTTTACTCCATGACTTTTTGCTTCATTTCCTGAT
CTCTTCCTTTACTTCTTGTTTCGATTCCCTTTAATATCAAATTATGACCT
TATAATTTAAATATTTAACAATTCCTTTATTCCCTGAATTTTATTTATCT
CTTCAATATGAATTCCTATATATTTACTTCTTTTCTCTTATTTATTATTT
TTTTCTTTGTTAAACTTTTATTTTATTTTCTCCTTAATTTTATTGTTTTT
CTTCCCCTTTTTTTTTTTTTTTTCTTTTTTTTCCTTTTTCTTTTTTTTTT
GGTTTATCTTTCTTTTCTTTTTATTATCTTCTCATTCTTTTTTTTTCTTC
TTTTTCCTTTTTTCTTTTCTTTTCTTCTTTTTTTTTATCTTCTTCCTTCC
CTTTTTATTTTAGTACTTTTTTCTTTTTTTTTTTCTTACTCTTTTATTTA
TATTATTTTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_m16.b1 MSMg01no048_m16.b1 CHROMAT_FILE:
MSMg01no048_m16.b1 PHD_FILE: MSMg01no048_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:07 2005
         (691 letters)



>mm_chr3_74283090_74284181
          Length = 1092

 Score =  569 bits (294), Expect = e-166
 Identities = 386/430 (89%), Gaps = 32/430 (7%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattctccagtctttcttttgccctta-aaaaa-a--attattgcagcttttgaagttt 69
           ||||||||||| ||||||||||    || ||||| |  ||||||||||||||||||||||
Sbjct: 426 gaattctccagcctttcttttg---atacaaaaacagtattattgcagcttttgaagttt 370

                                                                       
Query: 70  ttgagttcctagaacctggacaacccctcaaagcctttatttctataa-aatttttatta 128
           |||||||| |||||||||||||||  ||||||||||||||||| |||| || ||||||||
Sbjct: 369 ttgagttcttagaacctggacaacgtctcaaagcctttatttcaataataa-ttttatta 311

                                                                       
Query: 129 ttcaaacacacatgcacatgtgtgcaaatgcacacgtgcacatacacactcata-----a 183
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||     |
Sbjct: 310 ttcaaacacacatgcacgtgtgtgcaaatgcacacgtgcacacacacactcatatatgta 251

                                                                       
Query: 184 ta--------ta-----tatgta--tatc--tctatc-atctatctatctatctatctac 225
           ||        ||     ||| ||  ||||  |||||| ||||||||||||||||||||||
Sbjct: 250 tatctctatctatcatctatctatctatctatctatctatctatctatctatctatctac 191

                                                                       
Query: 226 tctagtggaacttttttggaagaaataggtgtggacttgttgaaggaggtgtgtaggagg 285
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 190 tctagtggaacttttttggaagaaataggtgtggacttgttgaaggaggtgtttaggagg 131

                                                                       
Query: 286 tgtactactggggctgagatctaaagtttcaaaagactcctgctcttcccagtgttccca 345
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 130 tgtactactggggctgagatctaaagtttcaaaagactcctgctcttcctagtgttccca 71

                                                                       
Query: 346 ctctctgccccctacttaaggatcaatatgtgagcttttagctactccagttaacatgcc 405
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 70  ctctctgccccctacttaaggatcaatatgtgagcttttagctactccggttaacatgcc 11

                     
Query: 406 tactgcttgc 415
           ||||||||||
Sbjct: 10  tactgcttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space:   736842
Effective search space used:   736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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