Query= MSMg01no048_p01.b1 MSMg01no048_p01.b1 CHROMAT_FILE:
MSMg01no048_p01.b1 PHD_FILE: MSMg01no048_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:25 2005
(648 letters)
>mm_chr3_116508540_116509587
Length = 1048
Score = 1151 bits (595), Expect = 0.0
Identities = 615/625 (98%), Gaps = 6/625 (0%)
Strand = Plus / Minus
Query: 3 tttttttctttaatactttttaaaagtcacatttttgaaaagccatctactgtgtggcct 62
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 619 tttttttctttaatactttttaaaagtgagatttttggaaagccatctactgtgtggcct 560
Query: 63 tgatgctgaacggcccttgtcttccaggtttgctcggggttttgggtcactgagctctgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgatgctgaacggcccttgtcttccaggtttgctcggggttttgggtcactgagctctgg 500
Query: 123 ctccagcttggctctcctgactctgcccttccctggggttggtttgtccttctcttctgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctccagcttggctctcctgactctgcccttccctggggttggtttgtccttctcttctgt 440
Query: 183 cttcagtattcctctcactctggcatctctcctcaggctctctgtcttcctcatttcagg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttcagtattcctctcactctggcatctctcctcaggctctctgtcttcctcatttcagg 380
Query: 243 tcattgccagcgtgtgcctggttcccttcttgctctgttcatctaccatagaaaccatgc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcattgccagcgtgtgcctggttcccttcttgctctgttcatctaccatagaaaccatgc 320
Query: 303 attcccatggctgggctctagcctcaatgctgaggactctgaaataatggcctcaagtgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attcccatggctgggctctagcctcaatgctgaggactctgaaataatggcctcaagtgt 260
Query: 363 cacttttttcttggaagcttttaagtcaagtataatgacaaggattgggaggcagacttt 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacttttttcttggaagcttttaagtcaagtataatgacaaggattgggaggcagactt- 201
Query: 423 atttatttatttgtttgtttgtttattcagttgttaacagactaatgttgagtaaattgc 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 -----tttatttgtttgtttgtttattcagttgttaacagactaatgttgagtaaattgc 146
Query: 483 attaattattattattactattattattaaacattaattttccttgtaaagatctgttgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 attaattattattattactattattattaaacattaattttccttgtaaagatctgttgc 86
Query: 543 tctcctgtggagtttaaaggctgtaatttagtgatgtatagttttatagcagtagagcct 602
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 85 tctcctgtggagtttaaaggctgtaatttagtgatatatagttttatagcagtagagcct 26
Query: 603 aagtaacaacaatgtgttggtcttt 627
|||||||||||||||||||||||||
Sbjct: 25 aagtaacaacaatgtgttggtcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_p01.g1 MSMg01no048_p01.g1 CHROMAT_FILE:
MSMg01no048_p01.g1 PHD_FILE: MSMg01no048_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:26 2005
(709 letters)
>mm_chr3_116368342_116369450
Length = 1109
Score = 1321 bits (683), Expect = 0.0
Identities = 702/709 (99%), Gaps = 2/709 (0%)
Strand = Plus / Plus
Query: 1 tttttctgagacatggtcacaccacgtaccattggctggcctggaactcacaaagatcat 60
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 203 tttttctgagacatggtcacaccacgtaggactggctggcctggaactcacaaagatcat 262
Query: 61 tctgcctctgcctcctgaatcctggaaccaaaagggtgtgccagacggcgagagggggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgcctctgcctcctgaatcctggaaccaaaagggtgtgccagacggcgagagggggag 322
Query: 121 ggaaaggactgtgggagtagtgggcgagcagtgagtaggatgtaaagtgagtaagtaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggaaaggactgtgggagtagtgggcgagcagtgagtaggatgtaaagtgagtaagtaaaa 382
Query: 181 aaaaaagtgcatgttgtcatgcctggccttactttaagcacactaacttttaaatacatg 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaa--gtgcatgttgtcatgcctggccttactttaagcacactaacttttaaatacatg 440
Query: 241 ttctttgaatgtacatctttagtggacaggctacattctaataataaacaaaatgcaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttgaatgtacatctttagtggacaggctacattctaataataaacaaaatgcaaat 500
Query: 301 gaacttttaattttacacagtgtgtttgtcattagaatattggtattgcagcatttagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacttttaattttacacagtgtgtttgtcattagaatattggtattgcagcatttagat 560
Query: 361 tcataataaaacacaagtattatattaggagtcaaactgtttcactgtaagaagacagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcataataaaacacaagtattatattaggagtcaaactgtttcactgtaagaagacagag 620
Query: 421 aacacaaaccatgacatcaaagtttaaggcctgcatcagcttctctaaaagctaggaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacacaaaccatgacatcaaagtttaaggcctgcatcagcttctctaaaagctaggaatg 680
Query: 481 aacacaaggaaacaccccacaaactgagtcagaaacactgattcaagtccatggtcttaa 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 aacacaaggaaacaccccacaaactgagtcagaaacactgattcaagtgcatggtcttaa 740
Query: 541 aaagatggattgtgggggcctagagagatagctcagtggttataagcactggctgctgtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagatggattgtgggggcctagagagatagctcagtggttataagcactggctgctgtt 800
Query: 601 tctgaggtcccaagttcaacttctagcaatcacatggtggttcacaaccatctgtaatgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgaggtcccaagttcaacttctagcaatcacatggtggttcacaaccatctgtaatgg 860
Query: 661 gatttgagtccctattctggtgtgtgtgaaaacagagcatccttataca 709
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 861 gatttgagtccctattctggtgtgtgtgaaaacagagcaaccttataca 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
