Query= MSMg01no049_f08.b1 MSMg01no049_f08.b1 CHROMAT_FILE:
MSMg01no049_f08.b1 PHD_FILE: MSMg01no049_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:14 2005
(694 letters)
>mm_chr3_17138081_17139174
Length = 1094
Score = 1166 bits (603), Expect = 0.0
Identities = 674/701 (96%), Gaps = 13/701 (1%)
Strand = Plus / Plus
Query: 1 aaattaataaaacagattt-aaaaaaatctataggacctgca---aaacaaagtagtata 56
||||||||||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct: 200 aaattaataaaacagatttgaaaaaaatctatagga----catttaaacaaagtagtata 255
Query: 57 actaaagtaaaaac-aa-aa-atgtgttaagaacggagctagatagagatcaaaggagaa 113
|||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||
Sbjct: 256 actaaagtaaaaacgaacaagatgtgttaagaatggagctagatagagatcaaaggagaa 315
Query: 114 cattttatcctagaaaaaaattatgaaaatcatttcaaaagtgaccaagaaataagaact 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 316 cattttatcctagaaaaaaattatgaaaatcatttcaaaagtgaccaagaaataataact 375
Query: 174 atattaataagtgtagaagctgaagaatgtctgaaataaattggtgcctttttccagcct 233
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 376 atattaataagtgtagaagctgaagaatgtctgaaataaact-gtgcctttttccagcct 434
Query: 234 tcagttggctaaacaaggcagacactggagccaggcaactagccttgtcacatttacatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcagttggctaaacaaggcagacactggagccaggcaactagccttgtcacatttacatc 494
Query: 294 ttcttttcagagacttgagaactgagaactgccccccaccccgacccccaactgagttgc 353
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 495 ttcttttcagagacttgagaactgagaactgaccccca-cccgacccccaactgagttgc 553
Query: 354 tgaagagactactttgcaactcaatcttgttgaaacaacagaccccagctgaaacaaagg 413
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 554 tgaagagactactttgcaactcaatcttgttgaaacaacagaacccagctgaaacaaagg 613
Query: 414 gacgttccttggattttcccatatatattcagagctgtatattaaaatttgagccttgat 473
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaagttccttggattttcccatatatattcagagctgtatattaaaatttgagccttgat 673
Query: 474 cataaacccttttcttggctcattatttctcttgtctgcccatcctaattccatccccag 533
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cataaaccctttccttggctcattatttctcttgtctgcccatcctaattccatccccag 733
Query: 534 ttttcctttcaggtaaacccggttatctgtggccaaaggatgactacaggcggtgcccaa 593
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 734 ttttcctttcaggtaaacccggttatctgtggccaaaggatgactacaggtggtgcccaa 793
Query: 594 tgtgaggcctggacacagaacgaccatctgggggacactgtccttggtagagctccacaa 653
|||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 794 tgtgaggcctggacacagaaagaccacctggggaacactgtccttggtagagctccacaa 853
Query: 654 aaattggtagaagttatgtatccgaccgggtcgtaagcaac 694
|||||||| |||||||||||||| || ||||||||||||||
Sbjct: 854 aaattggtggaagttatgtatcccacagggtcgtaagcaac 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_f08.g1 MSMg01no049_f08.g1 CHROMAT_FILE:
MSMg01no049_f08.g1 PHD_FILE: MSMg01no049_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:14 2005
(714 letters)
>mm_chr3_17181870_17182981
Length = 1112
Score = 1311 bits (678), Expect = 0.0
Identities = 702/710 (98%), Gaps = 2/710 (0%)
Strand = Plus / Minus
Query: 5 atgctattctcttaaaaaatgctctgggtcggatttgacatatatatatcaacatttggt 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 912 atgctattctcttaaaaaatgctctgggtcggatttgaaatatatatatcaacatttggt 853
Query: 65 gtcttttatgtagcaatgctcaaagatgaaattttgcgaactgatttgatcatgagtact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gtcttttatgtagcaatgctcaaagatgaaattttgcgaactgatttgatcatgagtact 793
Query: 125 tttctctattaatggtatttattgctgagcttataataattgcataatctttggagacgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 792 tttctctattaatggtatttattgctgagcttataataattgcataatctttggagatgt 733
Query: 185 aaaacgtaggatttgggacctaggtgaaggtcatgagacattctgaacatgtcattgggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aaaacgtaggatttgggacctaggtgaaggtcatgagacattctgaacatgtcattgggc 673
Query: 245 tttgtcttgtgcctatttccttgcttgctcctttcctgagtctttcaaacagtcatgtac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tttgtcttgtgcctatttccttgcttgctcctttcctgagtctttcaaacagtcatgtac 613
Query: 305 tccttaatgtaaagttctgtctcattaagataaaagaatatgggtaaaaatctttatgat 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 612 tccttaatgtaaagttctgtctcattaagataaaagaatatgg-taaaaatctttatgat 554
Query: 365 catcaggtccaataaattcttgatttttctcaggcacttttgtgacagtgacagaaaact 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catcaggtgcaataaattcttgatttttctcaggcacttttgtgacagtgacagaaaact 494
Query: 425 gaatagcacaatgaaatgttgactaggttgactaatttaatactgatgacaagtgagaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 493 gaatagcacaatgaaatgttgactaggttgactaatttaatactgatgataagtgagaaa 434
Query: 485 taactttataaggacaatgttattgacaaaggctaacaataaacagatgtgaagtattat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taactttataaggacaatgttattgacaaaggctaacaataaacagatgtgaagtattat 374
Query: 545 actaaagtggcctaaataagaaggaacacaaacacatcaatatgatcatggatctggatc 604
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 actaaagtggcctaaataagaaggaacaaaaacacatcaatatgatcatggatctggatc 314
Query: 605 aaatcgatgctgctgctggagaacattaggatattcatgtattgatgaattatcacaatg 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 313 aaatcgatgctgctgctggagaacattaggatattcatgtattgatgaattatcgcaatg 254
Query: 665 tgaaacaccattcatttcagggtctcaagctttgtattaacatatttttt 714
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgaaacac-attcatttcagggtctcaagctttgtattaacatatttttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1112
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1102
Effective search space: 775808
Effective search space used: 775808
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
