Query= MSMg01no050_a08.b1 MSMg01no050_a08.b1 CHROMAT_FILE:
MSMg01no050_a08.b1 PHD_FILE: MSMg01no050_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:46 2005
(441 letters)
>mm_chr3_100628993_100629833
Length = 841
Score = 632 bits (327), Expect = 0.0
Identities = 370/399 (92%), Gaps = 23/399 (5%)
Strand = Plus / Plus
Query: 1 ggccttgtgcaattgaaagatagcgacctccataaattcaagccccgaggtagagactgg 60
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 178 ggccttgtgcaattgaaagatagcgacctgtatgaattcaagccccgaggtagagactgg 237
Query: 61 gaaacttctcctcaccctttcac-----------------------cctgggccttggct 97
||||||||||||||||||||||| ||||||||||||||
Sbjct: 238 gaaacttctcctcaccctttcacaggtcagggcctagaaaggcatccctgggccttggct 297
Query: 98 tcacggagctatttcctcatacctgagccgtccacagctacatgcacccctcccagcctg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcacggagctatttcctcatacctgagccgtccacagctacatgcacccctcccagcctg 357
Query: 158 cactatttaaagacagcacaaaggaacccgatgtgagtcacaacacccaggagggcagca 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cactatttaaagacagcacaaaggaacccgatgtgagtcacaacacccaggagggcagca 417
Query: 218 gcaggcaggcagctccactcaccaaaatctggccccacacccagcaggactgtgggaagg 277
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 418 gcaggcaggcagctccactcaccaaaatctggccccacacacagcaggactgtgggaagg 477
Query: 278 aactccctctccatggcttccttggggcagatcatcttttggaggtaatcctctctctct 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aactccctctccatggcttccttggggcagatcatcttttggaggtaatcctctctctct 537
Query: 338 ctctccctctctctctctttctctctctctctctctctc 376
||||| |||||||||||| ||||||||||||||||||||
Sbjct: 538 ctctctctctctctctctctctctctctctctctctctc 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_a08.g1 MSMg01no050_a08.g1 CHROMAT_FILE:
MSMg01no050_a08.g1 PHD_FILE: MSMg01no050_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:46 2005
(319 letters)
>mm_chr3_100781691_100782409
Length = 719
Score = 538 bits (278), Expect = e-157
Identities = 309/322 (95%), Gaps = 6/322 (1%)
Strand = Plus / Minus
Query: 1 gtgataataataaagagccggtggtgacca---cccttctatgtgccatatccattacgg 57
|||||||||||||||| ||||||||||||| | ||| |||||||||||||||| ||
Sbjct: 519 gtgataataataaagaaccggtggtgaccaggtc---tctttgtgccatatccattaggg 463
Query: 58 atgctgaggaaggggctggcaggcaagataagtgatgctaaggttcttccactctcgttt 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atgctgtggaaggggctggcaggcaagataagtgatgctaaggttcttccactctcgttt 403
Query: 118 tatccacccatgcggcaggtatatattgagttttcacaccctgtgcttagcaagagtgct 177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 402 tatccacccatgcggcaggtatatattgagttttcacaccctgtgcttagcacgagtgct 343
Query: 178 gagcacaagtctctgatcttggcacttacgcatagtcagtgcatggaagagacagaggat 237
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 342 gagcacaagtctctgatcttggcacttacgcatagtcagtccatggaagagacagaggat 283
Query: 238 gatcaggcacacaaaggacttcgtgctcagtgctgggtgggaaaggaatgggactctccc 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gatcagacacacaaaggacttcgtgctcagtgctgggtgggaaaggaatgggactctccc 223
Query: 298 tgaaagaacagcaaggaaggtg 319
||||||||||||||||||||||
Sbjct: 222 tgaaagaacagcaaggaaggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
