Query= MSMg01no050_l24.b1 MSMg01no050_l24.b1 CHROMAT_FILE:
MSMg01no050_l24.b1 PHD_FILE: MSMg01no050_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:29 2005
(321 letters)
>mm_chr3_125427878_125428597
Length = 720
Score = 590 bits (305), Expect = e-173
Identities = 317/321 (98%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 1 gctaatgtttctaagcaccatttatccattggtctcagcatcccacttcatcgctatggc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gctaatgtttctaagcaccatttatccattggtc-cagcatcccacttcatcgctatggc 259
Query: 61 atgccatcctcagaaaactccaacatggtctctggagagccccagcaaattgggaaattg 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 260 atgccatcctcagaaaactccaacatggtctctggagagccccaggaaattgggaaattg 319
Query: 121 tgattctgaactgtagtaccctagaaagtgagggccatctttagtgggctcatggtcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgattctgaactgtagtaccctagaaagtgagggccatctttagtgggctcatggtcttg 379
Query: 181 ctacattttcagtctagattctcctaccttggcagtgattgagcatttatacctattttg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 ctacattttcagtctagattctcctaccttggcagtgattgagcatttatacatattttg 439
Query: 241 ttcactattccaaatacggagaagaaaaaactttattgactagaaatgtaaacatctaga 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcactattccaaatagggagaagaaaaaactttattgactagaaatgtaaacatctaga 499
Query: 301 tgtatttgcagatctaaacag 321
|||||||||||||||||||||
Sbjct: 500 tgtatttgcagatctaaacag 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_l24.g1 MSMg01no050_l24.g1 CHROMAT_FILE:
MSMg01no050_l24.g1 PHD_FILE: MSMg01no050_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:29 2005
(278 letters)
>mm_chr3_125532395_125533074
Length = 680
Score = 491 bits (254), Expect = e-143
Identities = 273/280 (97%), Gaps = 2/280 (0%)
Strand = Plus / Minus
Query: 1 ataggatgatgttctaatattgtaggttggatgaatgacttgaaaacaatatcaagagat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 347 ataggatgatgttctaatattgtaggttgaatgaatgacttgaaaacaatatcaagagat 288
Query: 61 gagtcaaatgcctttagag--aaaaagcagcacttcaaaggtggttatataattaagatg 118
||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 gagtcaaatgcatttagagaaaaaaaacagcacttcaaaggtggttatataattaagatg 228
Query: 119 gctaatatttatccaaatatttttcagaataaaaataaaattaataaaattactgttaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gctaatatttatccaaatatttttcagaataaaaataaaattaataaaattactgttaga 168
Query: 179 ctattgatagtagtcacctacattgcttaccaatttaatttattagattttatcattctg 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 167 ctattgatagtagtcacctacattgcttaccaatttaatttagtagattttatcattctg 108
Query: 239 aatgcacaggcttcaattgcacaagattaaatatatggga 278
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 107 aatgcacaggcttcaattgcagaagattaaatatatggga 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 680
Length adjustment: 9
Effective length of query: 269
Effective length of database: 671
Effective search space: 180499
Effective search space used: 180499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
