BAC Information

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BAC

Clone NameMSMg01-052B05
Chromosome3 (Build37)
Map Location 83,291,507 - 83,292,072
singlet/doubletsinglet
Overlap genenone
Upstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052B05.T7 (MSMg01no052_b05.b1)MSMg01-052B05.TJ (MSMg01no052_b05.g1)
ACCAG280659AG280660
length701700
length of high quality
(start - end)
570 (41 - 610)448 (69 - 516)
definitionCHROMAT_FILE: MSMg01no052_b05.b1 PHD_FILE: MSMg01no052_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:35 2005CHROMAT_FILE: MSMg01no052_b05.g1 PHD_FILE: MSMg01no052_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGAGTCTCTCTGTGAATGGATAAAGTGTATCCCATTGGGCTGCCCTTCA
TCTGTTAGAGATCTAAAAGATGGAGAAACTTGAATGAGTTTTAATTTTAA
GAAGAGAAGAAATAAAACCCAGAATCCCTAGCTAAGATTTTCAACATGAT
TTCTTGGAATTCAAAGCACTTAGCTCAGTCATCCAATAGAGAACGCTATA
GAGCTGGTGTTTCCATGTCTGCAAAGCATTTAGTATTATAGTGTCTCCAG
GGCTTGACTGGGGCACTGCAAAATCAGACTACCCACAACTGTCTAGGACA
CACAGGAACACTTCCCTCAGAAATAAATACATCACAGAGTAAGGACAGGT
ATACAACAAATATTAAAATGCTAAGTTATCATTTTGAAGTATCCAATTAT
CAAGGTTTGTTTTTTATGCCAACACTGAATGTTGATAAGAGGTCAAATGG
GGTGGGCAGTTTTCCACATACATTTTCTATATAGAGAAAAGCTTTGAAAA
TTTGCAGCGGTTCAATATTAAATTCAATCTGAAATGTACTTAAAGGCATA
GGAATAATGGTGTTCAGCAGTAGTAGCAGTAGTAGTAGCAGTAGTAGTAG
TAGCACCCCGTAGCAGTATTAATTTTTTATTCTTTTCCCCCCCTTTTTCC
G
GCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCTTCTTGAGCTCTTTGTATATATTCCTAGT
TCAATTTTTATGAGAGGCTTTATCCAGCAATTGATGGAAATAGATGCAAA
GACCCACAGCCAAATGTTAGGTGGAGTTTTAGGAATCCCTCAGAACAGGG
GGAAGGATTGTAGGAGTCAATGGTATTAAGGACACCAAAGAAAACCCACA
GAATCAATTAACCTGGGCCCGTAAGGGCTCAATGAACCTGAAACACTAAC
CAGGGAGCATGCATGGGATTGACCTGGTCTCCCTCTACATATGTTACAGT
TGTGTATGTAGGTTAGTCTTCTTGGGGGACCCCTATAAGTGGAACCAGTG
GCTGTGTCTGATTCTGTTGCCAGCCTTTGGGACCTTTTCTTCCTACTGGG
TTGCCTTGTGTAGGAAAGGAGGTGCCTAGTCTTACTGCAACTTGATATGG
CTGGTTAATAACTGTGGGAGGCCTGTCCTTTCCTAAAGAGAAACTGAGGA
ATATTTGTGTATGGAAGGAAGGGACTGGGCTTAAGAACGGAGGAGAAATT
GCAGCTGATCTGCTATCATAAGTCGATAGATAGAGAAATTAAGTGAAGGA
AGGATGGAAGGAAAGAAGGGAAGGAAGCGAGGAAGGAAATGAAGGAACGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_b05.b1 MSMg01no052_b05.b1 CHROMAT_FILE:
MSMg01no052_b05.b1 PHD_FILE: MSMg01no052_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:35 2005
         (570 letters)



>mm_chr3_83291303_83292272
          Length = 970

 Score = 1017 bits (526), Expect = 0.0
 Identities = 556/566 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgagtctctctgtgaatggataaagtgtatcccattgggctgcccttcatctg 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gaattcctgagtccctgtgtgaatggataaagtgtatcccattgggctgcccttcatctg 711

                                                                       
Query: 65  ttagagatctaaaagatggagaaacttgaatgagttttaattttaagaagagaagaaata 124
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 710 ttagagatctaaaagatggagaagcttgaatgagttttatttttaagaagagaagaaata 651

                                                                       
Query: 125 aaacccagaatccctagctaagattttcaacatgatttcttggaattcaaagcacttagc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 650 aaacccagaatccctagctaagattttcaacatgatttcttggaattcaaagcatttagc 591

                                                                       
Query: 185 tcagtcatccaatagagaacgctatagagctggtgtttccatgtctgcaaagcatttagt 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcagtcagccaatagagaacgctatagagctggtgtttccatgtctgcaaagcatttagt 531

                                                                       
Query: 245 attatagtgtctccagggcttgactggggcactgcaaaatcagactacccacaactgtct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 attatagtgtctccagggcttgactggggcactgcaaaatcagactacccacaactgtct 471

                                                                       
Query: 305 aggacacacaggaacacttccctcagaaataaatacatcacagagtaaggacaggtatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aggacacacaggaacacttccctcagaaataaatacatcacagagtaaggacaggtatac 411

                                                                       
Query: 365 aacaaatattaaaatgctaagttatcattttgaagtatccaattatcaaggtttgttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aacaaatattaaaatgctaagttatcattttgaagtatccaattatcaaggtttgttttt 351

                                                                       
Query: 425 tatgccaacactgaatgttgataagaggtcaaatggggtgggcagttttccacatacatt 484
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 350 tatgtcaacactgaatgttgataagaggtcaactggggtgggcagttttccacatacatt 291

                                                                       
Query: 485 ttctatatagagaaaagctttgaaaatttgcagcggttcaatattaaattcaatctgaaa 544
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 290 ttctatatagagaaaagctttgaaaatttgcggtggttcaatattaaattcaatctgaaa 231

                                     
Query: 545 tgtacttaaaggcataggaataatgg 570
           ||||||||||||||||||||||||||
Sbjct: 230 tgtacttaaaggcataggaataatgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)