BAC Information

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BAC

Clone NameMSMg01-052F12
Chromosome3 (Build37)
Map Location 138,565,299 - 138,685,234
singlet/doubletdoublet
Overlap geneTspan5, Rap1gds1
Upstream geneDnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, LOC620771
Downstream geneEG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052F12.T7 (MSMg01no052_f12.b1)MSMg01-052F12.TJ (MSMg01no052_f12.g1)
ACCAG280856AG280857
length692685
length of high quality
(start - end)
589 (43 - 631)299 (64 - 362)
definitionCHROMAT_FILE: MSMg01no052_f12.b1 PHD_FILE: MSMg01no052_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:56 2005CHROMAT_FILE: MSMg01no052_f12.g1 PHD_FILE: MSMg01no052_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,684,650 - 138,685,234)(138,565,299 - 138,565,597)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAAT
TCACAAAGGTTGCAGAAAAAAACTTCCTGTCCTGAATTGATACCATTGAA
ACTAAGACTAAAAATAAGTGGTTGTCCTGTGGTTGATGGATTAAGAAAAC
TCTCTTTGTGGTATGACTGGAAATAAACAAATAGTGCTGTAGTGAATTGT
GCACATTAAATCTGGAGGTAAAGGCAGCTTATTCAGCAAAAGATAGTTTA
GAGGAAAGGTCCAATGTATATGAGTGAGCTTTCATTATAGGTAGGGGAAG
TTCTTGAGTCATTTGCTGTCATTTGAATAGTTCACATTTGTATTACTGAA
CTTAATAGAAGGCATTTTTTCTTTCTTTCAGATGCAGAAACAAGTGAAAA
AATACAAGGAAGTGGAATTCTTCAGTTGTTTGCAAATCTGTTGACGCCAC
AGGCCTCCTGCACAGCCAAAGTAGCCAACATCATAGCAGAAGTAGCCAAA
AATGGTGAGGTTTCTGCTCGGAACATCTTCAGTTTTACACCTTACTTGTC
AGTATGTTTCATTAATTTATGTTTTGATTTCCTACATTAGATGTTTTCTA
CTTTTTCTTTGACTTTGTTACTATTTTAGGTGACTCCAGTTAACAGTTAT
TTTCTTCATCCATTCCCACTTATTCAGAGTAGAATTAGGGGA
ATGCAGTGATAGGCTGGCGGCCGCCTGTTCCCAACATTAGGTGAACTATA
GAATTTCCCCGAAATTCTGCTGTCTAACTTGGTTTCCTTTCCCCTTTTTT
TTTTAGATTTTTGCCATATGCCTGGCACAGAATTTGGTGAGTGACATTGA
AGCTGTCAGGGCTAGCTGGTAGACCCCTGCGACCACTGCTGTCAGACACT
GGACTGATCCCCCCTCACTGACTGACCCTCTGTGCACCGGCCGGCCGATG
GCGGGCTGTAGAGACCTGGTCACAGGCCTACAGTCTCACCTGATGGAGCT
GCCAAGAACTTAACTTTCTGTGGGGGTAGAACTGGGAAATGCTGCTCACA
GACGGAACTTGCAAAAAGAACAACAAAACAAGTGCGCAACTTGCTGAGTC
AACGTGCAGCGAATCTCTACTGTATCCGTGGATTGGCGGTCGGATGGATG
CTACCAGAAGGCGGAAGGGGGGAGGTTGGTCACGGCATGTACTTGAATTT
TTGGAGATAACAGTGCTGTACACATCTTGGCTAAAACTTGGGCCCTTAGC
CGTCAGGGCCAGGTGTCTTGAAATCTCTCAAACCCTTTGCATCTGTCCTC
CAGAGAAAAAACCAGCTGCCCCCTGTGTTCATATTCCGAAAAAGGTGGAG
CGTGCCTCCCTATAGCATGCGCCCTTCATCCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_f12.b1 MSMg01no052_f12.b1 CHROMAT_FILE:
MSMg01no052_f12.b1 PHD_FILE: MSMg01no052_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:56 2005
         (589 letters)



>mm_chr3_138684446_138685434
          Length = 989

 Score = 1069 bits (553), Expect = 0.0
 Identities = 577/585 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaaggttgcagaaaaaaacttcctgtcctgaattgataccattgaaactaag 64
           ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattcacaaaggatgtaggaaaaaacttcctgtcctgaattgataccattgaaactaag 730

                                                                       
Query: 65  actaaaaataagtggttgtcctgtggttgatggattaagaaaactctctttgtggtatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 729 actaaaaataagtggttgtcctgtggttgatggattaagaaaactctatttgtggtatga 670

                                                                       
Query: 125 ctggaaataaacaaatagtgctgtagtgaattgtgcacattaaatctggaggtaaaggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctggaaataaacaaatagtgctgtagtgaattgtgcacattaaatctggaggtaaaggca 610

                                                                       
Query: 185 gcttattcagcaaaagatagtttagaggaaaggtccaatgtatatgagtgagctttcatt 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 609 gcttattcagcaaaagatagtttagaggaaaggtccaatgtgtatgagtgagctttcatt 550

                                                                       
Query: 245 ataggtaggggaagttcttgagtcatttgctgtcatttgaatagttcacatttgtattac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ataggtaggggaagttcttgagtcatttgctgtcatttgaatagttcacatttgtattac 490

                                                                       
Query: 305 tgaacttaatagaaggcattttttctttctttcagatgcagaaacaagtgaaaaaataca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgaacttaatagaaggcattttttctttctttcagatgcagaaacaagtgaaaaaataca 430

                                                                       
Query: 365 aggaagtggaattcttcagttgtttgcaaatctgttgacgccacaggcctcctgcacagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aggaagtggaattcttcagttgtttgcaaatctgttgacgccacaggcctcctgcacagc 370

                                                                       
Query: 425 caaagtagccaacatcatagcagaagtagccaaaaatggtgaggtttctgctcggaacat 484
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 369 caaagtagccgacatcatagcagaagtagccaaaaatggtgaggtttctgctcgcaacag 310

                                                                       
Query: 485 cttcagttttacaccttacttgtcagtatgtttcattaatttatgttttgatttcctaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cttcagttttacaccttacttgtcagtatgtttcattaatttatgttttgatttcctaca 250

                                                        
Query: 545 ttagatgttttctactttttctttgactttgttactattttaggt 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttagatgttttctactttttctttgactttgttactattttaggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no052_f12.g1 MSMg01no052_f12.g1 CHROMAT_FILE:
MSMg01no052_f12.g1 PHD_FILE: MSMg01no052_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:56 2005
         (299 letters)



>mm_chr3_138565099_138565798
          Length = 700

 Score =  532 bits (275), Expect = e-155
 Identities = 293/299 (97%), Gaps = 1/299 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgctgtctaacttggtttccttt-ccccttttttttttagatttttgccatatgcc 59
           ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||
Sbjct: 201 attctgctgtctaacttggtttcctttcccccttttttttttagatttttgggatatgcc 260

                                                                       
Query: 60  tggcacagaatttggtgagtgacattgaagctgtcagggctagctggtagacccctgcga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcacagaatttggtgagtgacattgaagctgtcagggctagctggtagacccctgcga 320

                                                                       
Query: 120 ccactgctgtcagacactggactgatcccccctcactgactgaccctctgtgcaccggcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ccactgctgtcagacactggactgatcccccctcactgactgaccctctgtgcgccggcc 380

                                                                       
Query: 180 ggccgatggcgggctgtagagacctggtcacaggcctacagtctcacctgatggagctgc 239
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgatggcgggctgtagaggcctggtcacaggcctacagtctcacctgatggagctgc 440

                                                                      
Query: 240 caagaacttaactttctgtgggggtagaactgggaaatgctgctcacagacggaacttg 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagaacttaactttctgtgggggtagaactgggaaatgctgctcacagacggaacttg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space:   200390
Effective search space used:   200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)