BAC Information

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BAC

Clone NameMSMg01-052L02
Chromosome3 (Build37)
Map Location 11,534,426 - 11,534,724
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670564, LOC383826, EG667978
Downstream geneLOC667999, EG621965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052L02.T7 (MSMg01no052_l02.b1)MSMg01-052L02.TJ (MSMg01no052_l02.g1)
ACCAG281115AG281116
length700701
length of high quality
(start - end)
496 (68 - 563)299 (72 - 370)
definitionCHROMAT_FILE: MSMg01no052_l02.b1 PHD_FILE: MSMg01no052_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:23 2005CHROMAT_FILE: MSMg01no052_l02.g1 PHD_FILE: MSMg01no052_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAAT
TCTACCAGATCTCTAAAGAAGGCCTAATACCAAGCTATTTCACAAAATAA
AAACAGTTTCACTCCCTAATTCATTCTTTGAAGCCACAATTACACTTATA
ATTAAACAACACAAAGACCAACAAAGAAAGAGAACTTCAGACCAATTTTC
CTTATGAACATTGATCTAAAAATACTCAATAAATTTCTTGCCAATCAAAT
CTGAGAGCACATCAAAATGATCATTCAACAAGACTAAGTATGCCTCATCC
CAAGGACGGATGGTTCAATATATAGAAATCAATCATTGTAATCTACTACA
TAAAAAAAACTCAAAAAAAAAAAAAACCAAATGATCATTTTTTAGGTGCT
GAAAAAAAAACGTTTGATAAAATTCAACATCCCTTTATGTTAAAAATCTT
GGAAAAATCAGGAATTCAAGGCCCATACCTAAACATAACACAAGCAATAT
ACAGCAAACCAGTAGCTAACATCAAACTAAATGGAGAGAAACTTGAAGCA
ATCCCACTAAAATCAGGGACTAGACATGGCTGCCCTTTCTCTCCCTATTT
ATTCCATATAGAACTTGAAGTCCTAGCTAGAGTAACTAGACAAAAAATTG
TGGGCAAGGCTTTCACGAATAGACAAGGAGTATCTCAAAAAACCCCCATT

ATACACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGAGTCAACCTCATTAATTAGTCCTAT
TACCAAGAACTTTTAGGTACTGAACCATCTCTCCTATCTTCAAGTTAATT
GTTAGCTGATATTCTATTATCCCTTTAAACAATGCCTTACTTTTGAAACA
ATTTAATTAGTCAAAGAATTCTTTAACTTGTTTTTGTTGGTTTGATTTTC
TTAGGATTTATAATCAATAGGTCCTTTTTTCACCCAAATCTTTAGCTTTA
GTTCCTCACAATCTTTTAAAGTCTTACCATGAGATACATGATAGAATATA
GGTTTAATAAGATAAATACCACCACATATACTTGAAAGCAGGTTTATTTT
AAATGACATTTTATATTACTTCACATCAATGGGAGATGGTTTGGTAATTG
CCTTTTTTATTTCATATTCTAACTTACAAATGACAAGATGCATTATCACT
TCAGAATAAAAAGACAGGCAAATTGCTCCAAAGTATATTGTACCAAATGT
TTTGAGAACAATTTACGATGTAAAAATATTAATGACTTTCTTTTTGCTCA
CAATTTGCCTTAAATTTGATTATTGACAGTATAAGAACCTACATCAGACC
CATGGAATAAGGCATGTGTTTTACAAGTGGAACATGATCACCATTATTGA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_l02.g1 MSMg01no052_l02.g1 CHROMAT_FILE:
MSMg01no052_l02.g1 PHD_FILE: MSMg01no052_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:23 2005
         (299 letters)



>mm_chr3_11534226_11534925
          Length = 700

 Score =  540 bits (279), Expect = e-158
 Identities = 294/299 (98%), Gaps = 1/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagtcaacctcattaattagtcctattaccaagaacttttaggtactgaaccatctc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caggcgtcaacctcattaattagtcctattaccaagaacttttaggtactgaaccatctc 440

                                                                       
Query: 61  tcctatcttcaagttaattgttagctgatattctattatccctttaaacaatgccttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcctatcttcaagttaattgttagctgatattctattatccctttaaacaatgccttact 380

                                                                       
Query: 121 tttgaaacaatttaattagtcaaagaattctttaacttgtttttgttggtttgattttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttgaaacaatttaattagtcaaagaattctttaacttgtttttgttggtttgattttct 320

                                                                       
Query: 181 taggatttataatcaataggtcctttttt-cacccaaatctttagctttagttcctcaca 239
           |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 319 taggatttataatcaataagtcctttttttcacccaaatctttagctttagctcctcaca 260

                                                                      
Query: 240 atcttttaaagtcttaccatgagatacatgatagaatataggtttaataagataaatac 298
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 259 atcttttaaagtcttaccatgagatacatgatagaatatagatttaataagataaatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space:   200390
Effective search space used:   200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)