BAC Information

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BAC

Clone NameMSMg01-052M14
Chromosome3 (Build37)
Map Location 95,062,658 - 95,063,249
singlet/doubletsinglet
Overlap genePrune
Upstream geneEG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl
Downstream gene4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052M14.T7 (MSMg01no052_m14.b1)MSMg01-052M14.TJ (MSMg01no052_m14.g1)
ACCAG281185AG281186
length718719
length of high quality
(start - end)		606 (38 - 643)586 (67 - 652)
definitionCHROMAT_FILE: MSMg01no052_m14.b1 PHD_FILE: MSMg01no052_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:30 2005CHROMAT_FILE: MSMg01no052_m14.g1 PHD_FILE: MSMg01no052_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
ACTGCCCCTGGTATTACACTATCACTTTGAGTAAAAGTTAGGTCACTGCC
CTTCACAGGAATCTACCATCACCAAGGAAGAAAGAAGTTTCTGACGGTAG
GAGAAACCAGAATAGATACTTAGAACTATAGCTGAGTTACACCCATATAC
AGGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTGGTTTTAGAGTAT
TGCAATATTCATGAGATGGTTAGCTAGAACGGAACTCCCTAGTTAGAACC
ATGACTTGGGTGTGAAAGCCCTTGCCCTAGAAGAGTAAAGACCTCACACC
TGGCTTCTAAGACTATAGCTGAGTTACACCCATACACACGTATTTATAAT
GGCCTAAGGGGAAGGTGGACTATTAAATAGACCAAAATAGGAACTATGGC
AAGGGCACGAAGCCCTTGACCCTGGCTTCTAAGATTAAGTGAATCTTAGG
TGGAGCCCTTTTTGATCCCAGTTGTTAACAATGAATTTTATCCCATGTGG
TTCCCGTTAGACCTTCTGTGTTTGCATTCATCTGTTTTATGTAAGAATCC
AGTAACCTCTTTGTACCTTGCTGGTGTGTCACCCAACTTCCTTATTGTCT
TCTGCATAAAAAGTCTGATGCTCGATTTGACATTATATTCAGATCCTACT
CAACCTCTCCTGTGTGCT

AGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAACTGTCACATATTTGCAAAAGCTATCTGCAGC
TGGCAAAACCATGCCTCTACTAGAGCATGAGGTAAATCATAGTCAGCTGC
TGCAGACAGTCTGAAAAAGCCCCACATCCCTACACCTGGGATTAAAAGGA
AAACCTACTCATAATATTTCTGCGTTTTTTAAAAAAAAGCCCAAATTCCA
GAATTCTCAATATAGAGCCAACTTTCCTGCCCTGTCCAAAAAAACAAACA
AACAACCTTCACAAAAGAAAAAACAAAAACAAAACAAAGCCTCACACACA
AAATCACTACAGAGAATGATTTGTAGGAGTACAAAATAAGTGGATGCAGA
GAAACTAGCACTCGGGCTCTTACAGCAGCACAGTGAGGGACGATGGACTG
TAGAGAATCCCGGAGGAGAGGGAGGCAAGAGGAGAGGGTCCGAGGTACTC
CAGAGTGAGGGGGAGTGGAGGTGAGTGAAGGTGTCCCTTGCCCCTTCCAC
TGACTTGCTCTTACCTCCAAGTCCATGTAGATTGCACTGATTGCCACCTT
GGTGCCCTGTCTGTAGATTGTTTTCTGGTCCTTTCTGAGCATCTGCTCAG
TGGCCAGTCCTAGAAAATAGAAGTCAAACAGGGAACTTGGCCTAACACCG
CAAAGGTGAAGACGAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_m14.g1 MSMg01no052_m14.g1 CHROMAT_FILE:
MSMg01no052_m14.g1 PHD_FILE: MSMg01no052_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:30 2005
         (586 letters)



>mm_chr3_95062464_95063449
          Length = 986

 Score =  967 bits (500), Expect = 0.0
 Identities = 567/598 (94%), Gaps = 18/598 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactgtcacatatttgcaaaagctatctgcagctggcaaaaccatgcctctactagagc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 195 caactgtcacatatttgcaaaagctatcttcagctggcaaaaccatgcctctactagagc 254

                                                                       
Query: 61  atgaggtaaatcatagtcagctgctgcagacagtctgaaaaagccccacatccctacacc 120
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 255 atgaggtaaatcatagtcagccgcttcagacagtctgaaaaagccccacatccctacacc 314

                                                                       
Query: 121 tgggattaaaaggaaaacctactc--ataatatttctgcgttttttaaaaaaaa-gccca 177
           ||||||||||||||||||||||||  |||||||||||||| ||||||||||||| |||||
Sbjct: 315 tgggattaaaaggaaaacctactcttataatatttctgcg-tttttaaaaaaaacgccca 373

                                                                       
Query: 178 aattccagaattctcaatatagagccaactttcctgccctgtccaaaaaaacaaacaaac 237
           |||||||||||||||||||||||||||||||||||||||||||||||     ||||||| 
Sbjct: 374 aattccagaattctcaatatagagccaactttcctgccctgtccaaa-----aaacaaat 428

                                                                       
Query: 238 aaccttcacaaaagaaaaaacaaaaacaaaacaaagcctcacacacaaaatca------- 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 429 gaccttcacaaaagaaaaaacaaaaacaaaacaaagcctcacacacaaaatcactgattg 488

                                                                       
Query: 291 --ctacagagaatgatttgtaggagtacaaaataagtggatgcagagaaactagcactcg 348
             ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctctacagagaatgacttataggagtacaaaataagtggatgcagagaaactagcactcg 548

                                                                       
Query: 349 ggctcttacagcagcacagtgagggacgatggactgtagagaatcccggaggagagggag 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggctcttacagcagcacagtgagggacgatggactgtagagaatcccggaggagagggag 608

                                                                       
Query: 409 gcaagaggagagggtccgaggtactccagagtgagggggagtggaggtgagtgaaggtgt 468
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gcaagaggagagggaccgaggtactccagagtgagggggagtggaggtgagtgaaggtgt 668

                                                                       
Query: 469 cccttgccccttccactgacttgctcttacctccaagtccatgtagattgcactgattgc 528
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 669 cccttgccccttccactggcttgctcttaccttcaagtccatgtagattgcactgattgc 728

                                                                     
Query: 529 caccttggtgccctgtctgtagattgttttctggtcctttctgagcatctgctcagtg 586
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 729 caccttggtgccctgtctgtagactgtcttctggtcctttctgagcatctgttcagtg 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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