XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
TCCTTTACAATTGGTTTTCATGATCTGCTATGATAGAGTATTATCACCAA
TTGGTGCTTTAAAAGTAAGAGTACTGAAAGCCATTACACAGAGTCAGAGC
ATTAGTGCTTCACTGATAGACTATAACAGAAAGACCCTGATGGCAGATAA
AAAAATACAGCTTTTATTTCATTTTATTAAGTTAAGAGCCACTGAATTTA
AAATGGGAAAAAAGCCAGCCACATATTACTCATTATAGCTCAAATAAATT
AAAGTGCTAATTTTATATTTCTCTAATCACATATTCATTCAATATTGTTC
TCATTTGCTGCCTTCCAAGACTGGCATGTATAATTTGACTATTCATCAGA
AATATGGAAGGCTTTTACAAGAAAAAAATCCCTTTTCATTGTAAATGAAT
CTATAAAATAATAATATCCAGTTTCCTGAAACACTTAGACTATAAAGCAA
AATTTTTAGATGGTAAAGCTTATAAAATTAGGTCTTAAATTGAAATGAGA
ATATGGAACCTTGCACAAGGGCATCTTCCTGCAGTTGCAGTGAATTTGAG
CCACGTGATACGATCCAGGAGTGGTATGATAATTCAGACAAATTAATAAA
GTAGATTAAAGTCTAGTCCATGTTGCTAACAATTGTGAGCAAGGCCGGAA
GAGAAATGCAGAAGTTTTCAG

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAGATGTCTTTCATTTCTGTATTTCTGTCTTGA
CTCAATAGTCATTTGGTACAGAGTTTTTCAGTTTCTATATGTTTGTAAGT
TTTCTATTGCTGATGGTATTTTGTTTTTTAAATTCCAGGTTTAATCCATG
GTGGTCTGATAGAACAAAGGCTTACTTCAATTTTCTTGTATCTATCTGTT
GAAAGAGACTTACTCTTCTATCAAGTATTTGATCAATTTCAGAGAAGTCT
CCATGAGGTGCGGAGAAGGTATATATCTGAGAAGGTATATATATATATAT
TTGGGTGAAATTATATATGTATATATACACACACACTCCCACTATTGATA
TGTGTGGTTCAGCATGAGACTTAAGTTGTAGTAATGCTTCTTGTACCAAT
GTGGGTATCCTCTTGTTTGGCCCATAAGTGCTAGGACTTGAGATGCCACC
TTGGTGGATTTTTTTTAATGACTATGATGCATCCTTCTCCATCACTTTTG
ATTAATTTTTATTTGAAGTCTATTTGGTTAGATATTAGAATAAGTATACC
AATTTGAGTTTTTTTTAGTAATTTGATTAGAAAATATTTTCCTAACTCCT
TCATCTTAATTTTGAGGTTTGTCTCTAGCATGCAGCAAAAGGGTGGGTCC
CTGGTTGTGTTTCGGGTCTG

Query= MSMg01no052_o12.b1 MSMg01no052_o12.b1 CHROMAT_FILE:
MSMg01no052_o12.b1 PHD_FILE: MSMg01no052_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:40 2005
         (679 letters)



>mm_chr3_12631842_12632925
          Length = 1084

 Score = 1224 bits (633), Expect = 0.0
 Identities = 668/681 (98%), Gaps = 7/681 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttcctttac-aattggttttcatgatctgctatgatagagtattatcaccaa 63
           ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttc-tttaataattggttttcatgatctgctatgatagagtattatcaccaa 263

                                                                       
Query: 64  ttggtgctttaaaagtaagagtactgaaagccattacacagagtcagagcattagtgctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggtgctttaaaagtaagagtactgaaagccattacacagagtcagagcattagtgctt 323

                                                                       
Query: 124 cactgatagactataacagaaagaccctgatggcagataaaaaaa---tacagcttttat 180
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 324 cactgatagactataacagaaagaccctgatggcagataaaaaaaaaatacagcttttat 383

                                                                       
Query: 181 ttcattttattaagttaagagccactgaatttaaaatgggaaaaaa-gccagccacatat 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 ttcattttattaagttaagagccactgaatttaaaatgggaaaaaaagccagccacatat 443

                                                                       
Query: 240 tactcattatagctcaaataaattaaagtgctaattttatatttctctaatcacatattc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tactcattatagctcaaataaattaaagtgctaattttatatttctctaatcacatattc 503

                                                                       
Query: 300 attcaatattgttctcatttgctgccttccaagactggcatgtataatttgactattcat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attcaatattgttctcatttgctgccttccaagactggcatgtataatttgactattcat 563

                                                                       
Query: 360 cagaaatatggaaggcttttacaagaaaaaaa-tcccttttcattgtaaatgaatctata 418
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 cagaaatatggaaggcttttacaagaaaaaaaatcccttttcattgtaaatgaatctata 623

                                                                       
Query: 419 aaataataatatccagtttcctgaaacacttagactataaagcaaaatttttagatggta 478
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaataataatatctagtttcctgaaacacttagactataaagcaaaatttttagatggta 683

                                                                       
Query: 479 aagcttataaaattaggtcttaaattgaaatgagaatatggaaccttgcacaagggcatc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagcttataaaattaggtcttaaattgaaatgagaatatggaaccttgcacaagggcatc 743

                                                                       
Query: 539 ttcctgcagttgcagtgaatttgagccacgtgatacgatccaggagtggtatgataattc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcctgcagttgcagtgaatttgagccacgtgatacgatccaggagtggtatgataattc 803

                                                                       
Query: 599 agacaaattaataaagtagattaaagtctagtccatgttgctaacaattgtgagcaaggc 658
           ||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 804 agacaaattaaaaaagtagattaaagtccaatccatgttgctaacaattgtgagcaaggc 863

                                
Query: 659 cggaagagaaatgcagaagtt 679
           |||||||||| ||||||||||
Sbjct: 864 cggaagagaagtgcagaagtt 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1084
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1074
Effective search space:   718506
Effective search space used:   718506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)