NTTTTTTTTCCCCCTCCCCCNNTTTTTCCTCCCNCCCCCCACTGACACTT
TNTAATCTATAATTTGCGGCCGCTAAAAGAATCATATCGGGAGCNGGGCC
GNNGGAANCNCTTTTCCAAAATACTGCATTTTTTTTAAATTGCTTATTTG
TTTTCTTGATCTAGTTTTTTTCCTTCTTTATATGATTTGGATATTAGCCT
TCTATCGGATGTGTAGTTGGTAAAAAATCTTTTCCATTCTATAGGCTGGC
GCTTTTTCCTAAGGATGGTGCCCTTTGCTGGGCAGAAGCTTTTCAGTTTC
ATGAGGTCCTATTTACTAATTGTTGATCTTAATGCCTGTGCTATTGGTGT
TCTGTTCAGAAAGTCTTTTTTTGTGCCAACGAGCTCAAGGCATTTGATCT
GTTTGCATTCTTCTACTGACGGCCATTGAATTTGATCAGCACTATTTGTT
GAAGAACCTGTATTTTTTTTTCCACTTTGATTTCATTAACCAACATGGCT
ACTTCATGCCAATACCAAGCTGTGTTTATTTCTATAAATCTAAAATATAA
CTTGAGGTCAGGGATGGTGGTACCCCCAGCAATACTATTATTTAGGAGCG
GTTTTGGTATACTGAAGCTTTAAGGAGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGCGTGCCCCCAACACCCCACAAAATATCCATCCGATTCTTTTTTTT
TTTTTATATCACTTCTATAATTATACTTTCCATTTATCTCTTCTCTA

NNNNNNNNNNNCCCCNNNCCCCCGCCGCCCCNCTCCTCNTTTTTTTTNNN
NTTCAATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCCCCACGGAATTCTCCTTTACGTTGTGAACACAATGG
TAAAAGAGGGGAATTTGGACGCAGAAAACAAGAACAACTTTCAGCTTTTA
ACTTACAAATATCTATTAACAGTTTTTCTGGTTCACGCTTCAAAGTCGGG
ACTAATGGACCTCTTTTCTCATTCTGGTCGTTCTTGAATTTGCCTTTTCT
GTTCCAGATTATGAAGCCAAAATACCGCTCCCTTTCTTATCCCTTCCTGC
TACCAAAGTCTCAAGCAACGGCGCACGAGTTGAGGTATCAGGTGCCAGGG
GCCGTCCCCGCCAAAGTGCAGGTGAGCAAGTGACATCACTGTGACTGGGC
CAGCTTCCTGCGTCCTTCACTTCAGGTTTACCCAAAAGCATTTTCCCGTA
GTTCCTGAACCCCTGTGTGTGTCTAACGAATGTGTGTCCTCATAAAGGCC
ACAGTGCAGGACATAGCTGTTCCCGTGATTCCTTGCGGGATGACGCCAGC
AAGGTGTACACAGTGAACCATGGACTGGGGCTGCTTAATCACCAGGAATG
AGGCAGAACTTGGAGTCTGGGACGGGAGTTCTCATTCAATTGAATTTTAG
TGCTTAATTAACCAAGTACCTTTTAGAGGCTCTTTAAAAAGAATAGGCAG
TTGTTA

Query= MSMg01no054_a11.g1 MSMg01no054_a11.g1 CHROMAT_FILE:
MSMg01no054_a11.g1 PHD_FILE: MSMg01no054_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:07 2005
         (594 letters)



>mm_chr3_27987183_27988176
          Length = 994

 Score = 1040 bits (538), Expect = 0.0
 Identities = 580/594 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcctttacgttgtgaacacaatggtaaaagaggggaatttggacgcagaaaacaag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctcctttacgttatgaacacaatggtaaaagaggggaatttggacgcagaaaacaag 260

                                                                       
Query: 61  aacaactttcagcttttaacttacaaatatctattaacagtttttctggttcacgcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaactttcagcttttaacttacaaatatctattaacagtttttctggttcacgcttca 320

                                                                       
Query: 121 aagtcgggactaatggacctcttttctcattctggtcgttcttgaatttgccttttctgt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 aagtcgggactaatggacctcttttctcattctagtcgttcttgaatttgccttttctgt 380

                                                                       
Query: 181 tccagattatgaagccaaaataccgctccctttcttatcccttcctgctaccaaagtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagattatgaagccaaaataccgctccctttcttatcccttcctgctaccaaagtctc 440

                                                                       
Query: 241 aagcaacggcgcacgagttgaggtatcaggtgccaggggccgtccccgccaaagtgcagg 300
           |||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcgacagcacacgagttgagatatcaggtgccaggggccgtccccgccaaagtgcagg 500

                                                                       
Query: 301 tgagcaagtgacatcactgtgactgggccagcttcctgcgtccttcacttcaggtttacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagcaagtgacatcactgtgactgggccagcttcctgcgtccttcacttcaggtttacc 560

                                                                       
Query: 361 caaaagcattttcccgtagttcctgaacccctgtgtgtgtctaacgaatgtgtgtcctca 420
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaagcattttctcgtagttcttgaacccctgtgtgtgtctaacgaatgtgtgtcctca 620

                                                                       
Query: 421 taaaggccacagtgcaggacatagctgttcccgtgattccttgcgggatgacgccagcaa 480
           ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 taaaggccacagtgcggggcatagctgttcccgtgattccttgcgggatgacgctagcaa 680

                                                                       
Query: 481 ggtgtacacagtgaaccatggactggggctgcttaatcaccaggaatgaggcagaacttg 540
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 681 ggtgtacacagtgaaccatggactggggctgcttaataaccaggaatgagacagaacttg 740

                                                                 
Query: 541 gagtctgggacgggagttctcattcaattgaattttagtgcttaattaaccaag 594
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagtctgggaagggagttctcattcaattgaattttagtgcttaattaaccaag 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)