Query= MSMg01no054_b24.b1 MSMg01no054_b24.b1 CHROMAT_FILE:
MSMg01no054_b24.b1 PHD_FILE: MSMg01no054_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:14 2005
(656 letters)
>mm_chr3_125788106_125789161
Length = 1056
Score = 1147 bits (593), Expect = 0.0
Identities = 638/653 (97%), Gaps = 3/653 (0%)
Strand = Plus / Plus
Query: 5 gaattctcatgta-tactttgtcttcagccaggcaatgtgcacacaagagacaacaaaga 63
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatggaata-tttgtcttcagccaggcaatgtgcacacaagagacaacaaaga 263
Query: 64 gaattccaaaggagttttaagttatttatgagtcgactgcttacatgcaggaaactcaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaattccaaaggagttttaagttatttatgagtcgactgcttacatgcaggaaactcaca 323
Query: 124 tattttcagtgctttactagaattcacataattttttctgctattgagttcaccttccat 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 tattttcagtgctttactagaattcacataattttttctgctcttgagttcaccttccat 383
Query: 184 attacttgaaaattagcaatgcatacatgccctaacttatatgtcaagttcctgtttcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 attacttgaaaattagcaatgcatacatgccctaacttatatgtcaagttcctgttttct 443
Query: 244 tataaaacaaagactagcactgaatctataacattttcacagaatgtataaaatcttcat 303
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 444 tataaaacaaagactagcactgtatctataacattttcgcagaatgtataaaatcttcat 503
Query: 304 tacttacctaattgctatataatacaacaaaatcacaataaagacaaattgaattagaaa 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 504 tacttacctaattgctatataatacaacaaaatcacaacaaagacaaattgaaatagaaa 563
Query: 364 taaatttgaggatatcattaaaactcttaacctctgaaaactaaatagcagatttctaga 423
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaatttgaggatatcag-aaaactcttaacctctgaaaactaaatagcagatttctaga 622
Query: 424 cgaaccaaggtcaaagcaaaacttgcaataaaaatcaggagtcatgtcttatctaagtga 483
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caaaccagggtcaaagcaaaacttgcaataaaaatcaggagtcatgtcttatctaagtga 682
Query: 484 aaataaaaacacgatgtatgtgggcagtagagaacacatcattacttacaaagaaaccat 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaatgaaaacacgatgtatgtgggcagtagagaacacatcattacttacaaagaaaccat 742
Query: 544 tcaaagtaaaggtctgtattagaaaagagttcagtgggtgactcagctaaaagtaaagaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcaaagtaaaggtctgtattagaaaagagttcagtgggtgactcagctaaaagtaaagaa 802
Query: 604 agagaaaggaaattaaatccgtattaagctggagagtaaataacaaaggaaca 656
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 803 agagaaaggaaattaaatccgcattaagctggagagtaaataacaaaggaaca 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_b24.g1 MSMg01no054_b24.g1 CHROMAT_FILE:
MSMg01no054_b24.g1 PHD_FILE: MSMg01no054_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:14 2005
(624 letters)
>mm_chr3_125910724_125911747
Length = 1024
Score = 1149 bits (594), Expect = 0.0
Identities = 614/624 (98%), Gaps = 6/624 (0%)
Strand = Plus / Minus
Query: 1 ttttttcttggccagaccctgaagattgcttaattttaatgagatgcaaccaatctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 ttttttcttggccagaccctgaagattgcttaattttaatgagatgcaaccaatctgcat 884
Query: 61 gtgtatggtgtatataactatgctttatttttatgtttatgtttatatttaaattacatt 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 883 gtgtatggtgtatataactatgctttatt------tttatgtttatatttaaattacatt 830
Query: 121 taaatgtaagatctgtaatttatgtgacacaattgtatatactaatctagtttggggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 taaatgtaagatctgtaatttatgtgacacaattgtatatactaatctagtttggggaca 770
Query: 181 tagctgtgagtagttctccatgaacaagtcacaacacaaatgctaggaaatgtatctgtt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tagctgtgagtaattctccatgaacaagtcacaacacaaatgctaggaaatgtatctgtt 710
Query: 241 actcaggcttcaccaagcaacactgtatttaatatctcactttattcccatggttaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 actcaggcttcaccaagcaacactgtatttaatatctcactttattcccatggttaaaat 650
Query: 301 gtgtctttgtggtgttatttcttattgtcttcataaggcatacagaaattgatccgaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtgtctttgtggtgttatttcttattgtcttcataaggcatacagaaattgatccgaatt 590
Query: 361 agaaacctccctggttgtcacagacatgtcaaatggatgtgaccactgaaaccctgattt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 589 agaaacctccctggttgtcacagacatgtcaaatggatgtgaccaccgaaaccctgattt 530
Query: 421 ttatagaggcaaaattcgaccgtcactggccataaccctattgtgtcatagtatcgtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttatagaggcaaaattcgaccgtcactggccataaccctattgtgtcatagtatcgtctg 470
Query: 481 cacggtacctgacataagtccatagtgctactgtcaactcaccatccaaccagtcaacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cacggtacctgacataagtccatagtgctactgtcaactcaccatccaaccagtcaacca 410
Query: 541 gctgatgattgtgcccacctctagtggatatagttagagtttgcttgattctctgtgtcg 600
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 409 gctgatgattgtgcccacctctagtggatagagttagagtttgctcgattctctgtgtcg 350
Query: 601 atccaatgttaaggcatctttact 624
||||||||||||||||||||||||
Sbjct: 349 atccaatgttaaggcatctttact 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
