CCCCTNNGCCCCCCCNCCCNNTTTTTCCNCCCTTTACCCCAAACTATACA
TTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAGAGGAT
CCGCGGAATTCATATATCCATCATGGAGGGGGTTACTACAATGGAGTTGA
AATTAGGGGAAATAGCTTTACATATTATGATTCATGTGTCTAATTTCCTT
TATATTAATGGACAGTAGAATTAAAAAGAAAACCCAATTTTCAGTCACTT
TCTCAAAATAATAATGTGTGTTGCACTCTTTAGAAATTTAAAAACAGTTA
CTTCATAAATGCACAGAAAGTTAAACACACAATCTACCATGGAAGGTGAC
TCTAATGGAATTGAAATTAGGGGCAAATAGTTCTATATACTCTTTTATAA
TTCATATATACTTTTGAATATATTATATCCTTTCTCATCACCTATTTATA
TCTCCTTTCTAAATTTTTTAGACATTACCTATGTGTATGCCCATTTACAT
ATATGGATATATACATTATGAGCTAGGAATAGACTTGAGAAAGAATATGC
TGGGTTTTGTTTCTTTTTGAGTTTGGATCAAAGCACTTAACATTACACAT
TTTCCTGAAAGTTTCATTATTTCACTTTTATTTATAGCTGAAAAATACTC
CATGATGTATATTTGCACTATGTTTTTATTATCCATTCAGCTATTGATGA
ACATCTAGGCTCACTTCATTTTCCTGCTATTGTGCAGGACCAGCAACAAT
TATATATGTTCCTCC

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCATATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGATTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGATATTCCTAGCCAAATGGATGGACCTGTAGGGCATCATCCTGAGTGA
GGTAACCCATTCACAAAGGATTTCACCCCATATGTACTCACTGATAAGTG
GATATTAACCCAAAACCTAGGATACCCAAGATATAAGATACAATTTTTTA
ACCCCTTGA

Query= MSMg01no054_d08.b1 MSMg01no054_d08.b1 CHROMAT_FILE:
MSMg01no054_d08.b1 PHD_FILE: MSMg01no054_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:20 2005
         (448 letters)



>mm_chr3_113283035_113283882
          Length = 848

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatatatccatcatggagggggttactacaatggagttgaaattaggggaaatag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatatatccatcatggagggggttactacaatggagttgaaattaggggaaatag 266

                                                                       
Query: 67  ctttacatattatgattcatgtgtctaatttcctttatattaatggacagtagaattaaa 126
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 267 ctttacatattatgattcatgtgtctaattttctttatattaatggacagtagaattaaa 326

                                                                       
Query: 127 aagaaaacccaattttcagtcactttctcaaaataataatgtgtgttgcactctttagaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagaaaacccaattttcagtcactttctcaaaataataatgtgtgttgcactctttagaa 386

                                                                       
Query: 187 atttaaaaacagttacttcataaatgcacagaaagttaaacacacaatctaccatggaag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttaaaaacagttacttcataaatgcacagaaagttaaacacacaatctaccatggaag 446

                                                                       
Query: 247 gtgactctaatggaattgaaattaggggcaaatagttctatatactcttttataattcat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtgactctaatggaattgaaattaggggcaaatagttctatatactcttttataattcat 506

                                                                       
Query: 307 atatacttttgaatatattatatcctttctcatcacctatttatatctcctttctaaatt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atatacttttgaatatattatatcctttctcatcacctatttatatctcctttctaaatt 566

                                                                       
Query: 367 ttttagacattacctatgtgtatgcccatttacatatatggatatatacattatgagcta 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttagacattacctatgtgtatgcccatttacatatatggatatatacattatgagcta 626

                                 
Query: 427 ggaatagacttgagaaagaata 448
           ||||||||||||||||| ||||
Sbjct: 627 ggaatagacttgagaaaaaata 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)