Query= MSMg01no054_f09.b1 MSMg01no054_f09.b1 CHROMAT_FILE:
MSMg01no054_f09.b1 PHD_FILE: MSMg01no054_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:30 2005
(239 letters)
>mm_chr3_96402048_96402686
Length = 639
Score = 462 bits (239), Expect = e-135
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 1 agaccgcgtctttctcggcgtcacagcaccgaaggcccggaggacccgcccccatgggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccgcgtctttctcggcgtcacagcaccgaaggcccggaggacccgcccccatgggcg 260
Query: 61 gagaaagtgacgggtgggggtcctctctcgcgccgaaacactgcgcccgaggctcaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaagtgacgggtgggggtcctctctcgcgccgaaacactgcgcccgaggctcaggag 320
Query: 121 tctggtcttccttcagggctaaggcaaaaactgagccgcatggagccggtggagctcgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtcttccttcagggctaaggcaaaaactgagccgcatggagccggtggagctcgac 380
Query: 181 acccctggacatttttgccctgactcccccgagtccagccggttatccctggagcgccg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccctggacatttttgccctgactcccccgagtccagccggttatccctggagcgccg 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no054_f09.g1 MSMg01no054_f09.g1 CHROMAT_FILE:
MSMg01no054_f09.g1 PHD_FILE: MSMg01no054_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:30 2005
(401 letters)
>mm_chr3_96568219_96569019
Length = 801
Score = 671 bits (347), Expect = 0.0
Identities = 368/377 (97%), Gaps = 5/377 (1%)
Strand = Plus / Minus
Query: 1 aaggccagccattttacatggcaagttccaaagcagcctgagctaccagagagtcttgac 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 373 aaggccagccattttacatggcaagttccaaagcagcctgagctacaagagagtcttgac 314
Query: 61 cagccctgccaagataaaaggaacataaaaattaaactgtttgtaatattaaggtaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cagccctgccaagataaaaggaacataaaaattaaactgtttgtaatattaaggtaataa 254
Query: 121 aagaaaaggacactcccaaaatcatcttaagattggctaccatcatggcagacttgtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aagaaaaggacactcccaaaatcatcttaagattggctaccatcatggcagacttgtttg 194
Query: 181 tttgtttgtttgtttgtttgtttgttcttccaagtcagggtttcactgtgtagccctggc 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 193 tttgtttgtttgtttgtttgttt----ttccaagtcagggtttcactgtgtagccctggc 138
Query: 241 tgtcctatatctcactctgtagacta-tctggccttatattcaaagatctgcctgcctct 299
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 137 tgtcctagatctcactctgtagactagtctggccttatattcaaagatctgcctgcctct 78
Query: 300 gccccctgagtgctgagattaaaaacgtgtgccactaccacccacctaattttacttttt 359
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 77 gcctcctgagtgctgagattaaaaacgtgtgccactaccacccagctaattttacttttt 18
Query: 360 tatcgaagatttatttt 376
|||||||||||||||||
Sbjct: 17 tatcgaagatttatttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
