BAC Information

Click to search

BAC

Clone NameMSMg01-056E08
Chromosome3 (Build37)
Map Location 155,267,819 - 155,426,203
singlet/doubletdoublet
Overlap genenone
Upstream geneCryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, Negr1, LOC100041152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056E08.T7 (MSMg01no056_e08.b1)MSMg01-056E08.TJ (MSMg01no056_e08.g1)
ACCAG283720AG283721
length695712
length of high quality
(start - end)
316 (36 - 351)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no056_e08.b1 PHD_FILE: MSMg01no056_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:53 2005CHROMAT_FILE: MSMg01no056_e08.g1 PHD_FILE: MSMg01no056_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,267,819 - 155,268,129)(155,425,958 - 155,426,203)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAT
TTCCAGATTATATCCATTTGTAATGATATTTATCACTTTGCTCTTATTTT
TGATTGTTTCCCTCTCAAGTCTTTCTTCTGAAAACAACAGGTTCCCAAAT
CATTCTTTGCTCTTCATTGCAATCAGAGAATCTTTATCTTTAATCAGGAA
GGTTAATCTGTATAGAGCTTTTATAATCATCAGGCTCTTATGGTTTTCTT
GTAACACTGAAATTTAGGTTATCAGGCAATCTTTTCTTTTGAGTATTCTC
TATTAGAAATAGCAATTAAATTAGACTTTTTATTTCCTTTTTCCTTTTTA
TTAATTACGGCACCCTTCTTTTTCTTTTCTTATTTAACAAATAATTTGTG
GCTAAGGCACAGACCAAGGCTCAGCTTTGCTTACACTGTAAGAAGGTCAA
GATTTCTGTGTTGTTGGAACTATACATGTAACAACTCAGGAACTGATTTT
TTTTCTTTCCACTATGAGAGCTTTGGAGAAGGAAGCTAGGTCAGTTACTA
GGAATGGCTGCTAACACCTTTACTCACAGGAACATCTCCTGAGCACACTT
CCAAAGTTTTGTTTGCCTTGCTATTTGATCTTTCAAGACCCTCAGGCAAA
GTGCATTGCTTTATGCTGCAGACAGATGACACTTTATGTTTGAGG
CCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCCACACGGAATTCTTCAGTAAATAGAAGCACAGA
TTCTTGAAGGAATACCTTGTTCTGTGGCTAAGACGAAAAATGTACTCAAT
GAGTTGAGAACATTTCAGAATGGTAGAAGGAATCTGTTCAAAGAAAAATA
TGCAACATTTTTGTAAGAGTTATGAATAATTATTGAGATACAAACATTAA
CAGACTGGCATATAAGGAGAAGAGGGAGCACAACTTGACTGAGGCAATGA
AGTACTGGATTATAAGCAAAAATTCATGTCACTAAATCCATCATGATAAT
GATCTACCTCATAAATTTGATCAAACAAGCAATTTTTCTATTCAGAACAA
TTGCAAAGAATGCTAACCCTGAGGATGATAGCAAGTATCTCCTAACTTCC
TGAGTGCACTTTGATTATAATAACTCTTCTTCAAAGAGTACAAGGAGAAT
GATGGAGCTGTATACATTTACAGGCGAAATATATGACACACACTACATAT
ACCAGTACACCAGTTGATCAAGTTCATCATCCAAAAAAAATTAAATTAAC
AAAGCCACCTTGACATAGAAGTTCCTTGGCTATGAAACAGATGTGGTTAG
ATGATGCTTTGTATGTCTAACACGATGCTCATAATACTCATAATCCCAGC
CTGATACTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_e08.b1 MSMg01no056_e08.b1 CHROMAT_FILE:
MSMg01no056_e08.b1 PHD_FILE: MSMg01no056_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:53 2005
         (316 letters)



>mm_chr3_155267615_155268330
          Length = 716

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttatttccagattatatccatttgtaatgatatttatcactttgctcttattt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatttccagtttatatccatttgtaatgatatttatcactttgctcttattt 264

                                                                       
Query: 65  ttgattgtttccctctcaagtctttcttctgaaaacaacaggttcccaaatcattctttg 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgattgtttctctctcaagtctttcttctgaaaacaacaggttcccaaatcattctttg 324

                                                                       
Query: 125 ctcttcattgcaatcagagaatctttatctttaatcaggaaggttaatctgtatagagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcttcattgcaatcagagaatctttatctttaatcaggaaggttaatctgtatagagct 384

                                                                       
Query: 185 tttataatcatcaggctcttatggttttcttgtaacactgaaatttaggttatcaggcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttataatcatcaggctcttatggttttcttgtaacactgaaatttaggttatcaggcaa 444

                                                                       
Query: 245 tcttttcttttgagtattctctattagaaatagcaattaaattagactttttatttcctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttttcttttgagtattctctattagaaatagcaattaaattagactttttatttcctt 504

                      
Query: 305 tttccttttta 315
           |||||||||||
Sbjct: 505 tttccttttta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no056_e08.g1 MSMg01no056_e08.g1 CHROMAT_FILE:
MSMg01no056_e08.g1 PHD_FILE: MSMg01no056_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:53 2005
         (246 letters)



>mm_chr3_155425637_155426282
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttcagtaaatagaagcacagattcttgaaggaataccttgttctgtggctaagacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attcttcagtaaatagaagcacagattcttgaaggaataccttgttctgtggctaagacg 508

                                                                       
Query: 61  aaaaatgtactcaatgagttgagaacatttcagaatggtagaaggaatctgttcaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaaaatgtactcaatgagttgagaacatttcagaatggtagaaggaatctgttcaaagaa 448

                                                                       
Query: 121 aaatatgcaacatttttgtaagagttatgaataattattgagatacaaacattaacagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaatatgcaacatttttgtaagagttatgaataattattgagatacaaacattaacagac 388

                                                                       
Query: 181 tggcatataaggagaagagggagcacaacttgactgaggcaatgaagtactggattataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tggcatataaggagaagagggagcacaacttgactgaggcaatgaagtactggattataa 328

                 
Query: 241 gcaaaa 246
           ||||||
Sbjct: 327 gcaaaa 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)