BAC Information

Click to search

BAC

Clone NameMSMg01-056H12
Chromosome3 (Build37)
Map Location 45,235,579 - 45,235,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10
Downstream geneLOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056H12.T7 (MSMg01no056_h12.b1)MSMg01-056H12.TJ (MSMg01no056_h12.g1)
ACCAG283872AG283873
length745745
length of high quality
(start - end)
118 (72 - 189)112 (69 - 180)
definitionCHROMAT_FILE: MSMg01no056_h12.b1 PHD_FILE: MSMg01no056_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:08 2005CHROMAT_FILE: MSMg01no056_h12.g1 PHD_FILE: MSMg01no056_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAAT
TCTTTTTAATGTTCTGATTCCACATGAAGAGTCAGTTTTTAAAAAATAGC
ATAAAATAGCATTATTTTCTTTCATTACATTGGTTTATTTGCCATTTTGT
TTTAATTTGATTAGGACCTGAATTAGTGCCTAACTAGCATCAGGAAACTA
TCAAGCTTCAGCACTGGAGGTCAATTTAATTACACTGTGCATGACAGAAT
CTAGGTCATGTGGGTATTGCCTTTGCCACCAGCACTTGACACCTGCGTGT
TAATGAGCTGGTAATTATTAATTGTTTCTTGTAGACACTTTTTACTGTTT
GTGACTAGAATAACCATATGTTGCTCCACTTTTCTGTCTATCTCTTTTGT
AGGTTTAGAATCACATAATTATATCTGAGACGATCTATTATATGCTAATT
CTTCTTTTGATATTATCCTTATTGGAAATATCTATTTTAAAATCATAATC
TCTATTTCATTTTTACGTGTAAAAATCTTTCTAGAATTATAACAGTTTAT
TCTGTTCATCAATATGTCCGACAATTTATGATGATCCATATCGTTCTATA
ACTCTTACGTTCTTTTCCTATTTAAATATCTTCCTTAGTTTCTTTTTTCT
TTATTATTCTCCTTATACATTTTTCAATAATCCATTAATTGATAATAATA
TGAATAAAATTAATATATTGTTTCATCAATTCCTCGTCCATTAAT
ATGCATGGGTAGGCTGGCGGCCGCCTGTCTTCAAAATAAGGTGACCTATA
GAATGTCTCTGGAATTCTGATCTTTCCAATCTTTTATCATGAATGGGTGT
TGGATCTTGTCAATGCTTTTTCTGCATCTAACGAAATGATCATGTGGTTT
TTGTCTTTGAGCTCGTTTATATAATGGATTACATTGATGGATTTTCGTAT
ATTATACCATCCCTGCTTCCCTGGATTATAACCTACTTGTACATTACGCA
TGATTGCTTTATTGTGTTCTTGTATTCGTTTATCGAGAATTTTATTGAGG
ACCTTTGTATTTTTTATTGATAAATTAATTGGTCTATATTTTTTTATTAT
TTGTTGTTTTCTTTCCGCGATTTATTATTCTGATTATTAGTGTCTTTCTT
AATTAGAGTTGGCAGAGTACCTTCTATTTCTTATTTTGAGATATTTTTTG
TGCAGACATGTCAATATTTCTACCTTCGTTTTTCTGAAATAATTTTTATT
TAAATCATTTCTGATACAGAATCTTTTTTTTTAATATTTAAATAATTAAT
TACTGATTATTTTTTTTTTTAATTTACTTGATATATGTATAAAATTTATA
TTTTATTCCTTAATTACCTCTAATTTCCTTATATAATGTCCATATATTTT
TATTATATACTATCATTTTTACCCTTTCTACCCATTCCAATAACTCTTAT
ATAAAATTTATTTGGAGGGTGTTTTTGCATTATTTTCATTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_h12.b1 MSMg01no056_h12.b1 CHROMAT_FILE:
MSMg01no056_h12.b1 PHD_FILE: MSMg01no056_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:08 2005
         (118 letters)



>mm_chr3_45235379_45235896
          Length = 518

 Score =  209 bits (108), Expect = 5e-59
 Identities = 111/112 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgaagagtcagtttttaaaaaatagcataaaatagcattattttctttcattacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 acatgaagagtcagtttttaaaaaatagcataaaatagcattattttcttttattacatt 260

                                                               
Query: 61  ggtttatttgccattttgttttaatttgattaggacctgaattagtgcctaa 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttatttgccattttgttttaatttgattaggacctgaattagtgcctaa 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)