Query= MSMg01no056_m22.b1 MSMg01no056_m22.b1 CHROMAT_FILE:
MSMg01no056_m22.b1 PHD_FILE: MSMg01no056_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:33 2005
(445 letters)
>mm_chr3_42383752_42384597
Length = 846
Score = 716 bits (370), Expect = 0.0
Identities = 406/418 (97%), Gaps = 3/418 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgtctaccagacactgctttctagtagctatatacttgattaagtacattaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaattctttgtctacaagacactgctttctagtagctatatacttgattaagtacattaa 358
Query: 65 aggactttctaggacttaattataagta-ttttttaatggaaggggtaaggcttaatcat 123
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 357 aggactttctaggacttaattataagtatttttttaatggaaggggtaaggcttaatcat 298
Query: 124 tgtctaccataaatagaaatgttcaagagccatagtatctggaatgtcgtgcagatatgc 183
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 297 tgtctaccataaatagaaaagttcaagagccatagtatctggaatgttgtgcagatatgc 238
Query: 184 atatattacttgctttaattaatgtagagtaagataaattaattaaaatattaatgccat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atatattacttgctttaattaatgtagagtaagataaattaattaaaatattaatgccat 178
Query: 244 tttaaataaagcattactatcaagaacaccttatcatttcccacaataatcagcattatg 303
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 177 tttaaataaagcattgttatcaagaacaccttatcatttcccacaataattagcattatg 118
Query: 304 cccattgctaaatggagacccaaaataagcgctattggtagtatgtgagtgtggactaaa 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 117 cccattgctaaatggagacccaaaataagcgctattggtagtgtgtgagtgtggactaaa 58
Query: 364 taggttgtcttgaagcctgtcattgttttgatttataaatactt-attaaattttatt 420
||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||
Sbjct: 57 taggttgtcttgaagcctgtcatagttttgatttataaat-ctttattaaactttatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 846
Length adjustment: 10
Effective length of query: 435
Effective length of database: 836
Effective search space: 363660
Effective search space used: 363660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_m22.g1 MSMg01no056_m22.g1 CHROMAT_FILE:
MSMg01no056_m22.g1 PHD_FILE: MSMg01no056_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:34 2005
(283 letters)
>mm_chr3_42224461_42225143
Length = 683
Score = 532 bits (275), Expect = e-155
Identities = 281/283 (99%)
Strand = Plus / Plus
Query: 1 tctacacagcccatgtcccatctcaataccacttagagtggtcatagccacctgttttct 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tctacacagcccatgtcccatctcaataccacttagagtgttcatagccacctgttttct 260
Query: 61 aagcttattactccattatattttgcttttgtggactactctttagcttttccacagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttattactccattatattttgcttttgtggactactctttagcttttccacagcct 320
Query: 121 ttgacattatcttaagttaatctctaaatttctatcttgtataagatgtgttctcttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgacattatcttaagttaatctctaaatttctatcttgtataagatgtgttctcttcta 380
Query: 181 ctgatggtgccacaaaaaccaaggagccatctgttttgtcagcaagggctcggatctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgatggtgccacaaaaaccaaggagccatctgttttgtcagcaagggctcggatctaga 440
Query: 241 gtactgtctattttgttgtgtccatcaaatatttacctagtag 283
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gtactgtcaattttgttgtgtccatcaaatatttacctagtag 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
