GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGTTGTACCTTCTTTTAATTATCAGGAACATGACCTAGGGATG
CCTTCTTTAAATCACTGAGAACTGTAGATTTAAAGAATAAACACAGAAGT
TAAAGATTTTGCTTCTGTTTTGACTACAAAGAAGATGGATCATCTTGGTA
CAAATCAAGGCCAAGGGACTGGGGTTTCCAAAGTTAGAAGCATATAGACT
ACAATTCCATCACAACACTGCATGTGTTCCTCCTTCTGAAGAAACCAGGT
CTACTTGGGAACCTTAATTGTGTCCCAGGGTTCTTCATTGTTCTCCCTGT
GGGCAACTCTGGTCAAGCAAAGGTAACAGCAGCTACAGTGCAGGTTTATG
TATTCTCTCAGATGGCAAACACATTAACTTTTGCACTCTCTGTTGGGGTT
TAATTTACCATAACTTCTTTCGTTCTGGAAGACCATGGGTAATTCAAGTT
TAGCTTATGATGAGGACGTTTCTAATGAATGGCTAGTGAGTATGATAGTA
TGACTTCTATTTTGTCCTAGAGAGTAGTCTGTAGGGTTACAAGTTTGGCA
TTGTATATCGTATAACATTGTCATTGTTATACCGCAGCTTTAGTTGTAGT
CTCTGGGCCCACCTAGTAACCTTTGTAGGGAAAGTATTAGAAGAGGAGAA
CTCATTAATTCTCT

AATGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCTCTATTTCTATACGTATGCCTTATC
AGTATCAGACATATATTTTCCAAAGATGTTCTTCACGTTTGTGACTTCTA
CTTTTATTACCTTAAGAATAACTTTCACAGAGTAAAAGTTTTATCAGTGA
TGCAGCTGTGTAGGGATGATGCATTGGTTGTTGAATATGAGAATTCAACC
AACTCAGTGCTACTAAGATGCGCTCCAGGGCTTTTCTGTAGATGTTTAGC
AATTTCCTTCTTGCTTATGGTACTGCTACTCGCTTTGAGATGGGTTTTAT
GCAAGCTGTGAGATCTGAGTTTACATTCATGCTCCTGCAAGCTCATATCA
GATCCTGATAGTTTTATTGATGAGTGTGTCTACTCTTTTGGAAATCCCTT
TTCTGTATTAAAATAAGCTTATATGAGGGTCAGTTTCTGAGTCCTCTACT
CTGATTCTATTGATTGCTTTCATCAATACTACATTATCTTTTTGGAAAAA
GGTTGGTACTTTGTAAGCTAGGGTTGGGTTTCTGACACAAAATTTCCCTG
TGAAAGGCTTGCTTAAGTACTTATATAGTAGCCTAAGGTGGCCCCAAACA
TGCCGGGATATTCCAAGGCAAAAGCATAGTGGTTTTTTCCTGTCCCAATC
TTGATTCATAGAGGGGTCTCAATCG

Query= MSMg01no056_n14.b1 MSMg01no056_n14.b1 CHROMAT_FILE:
MSMg01no056_n14.b1 PHD_FILE: MSMg01no056_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:37 2005
         (430 letters)



>mm_chr3_133904726_133905555
          Length = 830

 Score =  772 bits (399), Expect = 0.0
 Identities = 420/427 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttagttgtaccttcttttaattatcaggaacatgacctagggatgccttcttt 63
           |||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 204 ggaattcttagttgcacattcttttaattatcaggaacatgacctaaggatgtcttcttt 263

                                                                       
Query: 64  aaatcactgagaactgtagatttaaagaataaacacagaagttaaagattttgcttctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatcactgagaactgtagatttaaagaataaacacagaagttaaagattttgcttctgt 323

                                                                       
Query: 124 tttgactacaaagaagatggatcatcttggtacaaatcaaggccaagggactggggtttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgactacaaagaagatggatcatcttggtacaaatcaaggccaagggactggggtttc 383

                                                                       
Query: 184 caaagttagaagcatatagactacaattccatcacaacactgcatgtgttcctccttctg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 caaagttagaagcatatagactacaattccatcacaacactgcatgtgttcctccttccg 443

                                                                       
Query: 244 aagaaaccaggtctacttgggaaccttaattgtgtcccagggttcttcattgttctccct 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 aagaaaccaggtctacttgggaaccttaattgtgtcccagggttcttcattgttcttcct 503

                                                                       
Query: 304 gtgggcaactctggtcaagcaaaggtaacagcagctacagtgcaggtttatgtattctct 363
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 gtgggcaactctggtcaagcaaaggtaacagcagctacagtacaggtttatgtattctct 563

                                                                       
Query: 364 cagatggcaaacacattaacttttgcactctctgttggggtttaatttaccataacttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagatggcaaacacattaacttttgcactctctgttggggtttaatttaccataacttct 623

                  
Query: 424 ttcgttc 430
           |||||||
Sbjct: 624 ttcgttc 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no056_n14.g1 MSMg01no056_n14.g1 CHROMAT_FILE:
MSMg01no056_n14.g1 PHD_FILE: MSMg01no056_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:37 2005
         (398 letters)



>mm_chr3_133984838_133985635
          Length = 798

 Score =  723 bits (374), Expect = 0.0
 Identities = 389/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tctatttctatacgtatgccttatcagtatcagacatatattttccaaagatgttcttca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tctatttctatacatatgccttatcagtatcagacatatattttccaaagatgttcttca 539

                                                                       
Query: 65  cgtttgtgacttctacttttattaccttaagaataactttcacagagtaaaagttttatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cgtttgtgacttctacttttattaccttaagaataactttcacagagtaaaagttttatc 479

                                                                       
Query: 125 agtgatgcagctgtgtagggatgatgcattggttgttgaatatgagaattcaaccaactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agtgatgcagctgtgtagggatgatgcattggttgttgaatatgagaattcaaccaactc 419

                                                                       
Query: 185 agtgctactaagatgcgctccagggcttttctgtagatgtttagcaatttccttcttgct 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agtgctactaagatgcactccagggcttttctgtagatgtttagcaatttccttcttgct 359

                                                                       
Query: 245 tatggtactgctactcgctttgagatgggttttatgcaagctgtgagatctgagtttaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tatggtactgctactcgctttgagatgggttttatgcaagctgtgagatctgagtttaca 299

                                                                       
Query: 305 ttcatgctcctgcaagctcatatcagatcctgatagttttattgatgagtgtgtctactc 364
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 298 ttcatgctcctgcaagctcctatcaaatcctgatagttttattgatgagtgtgtctactc 239

                                             
Query: 365 ttttggaaatcccttttctgtattaaaataagct 398
           ||||||||||||||||||||||| ||||||||||
Sbjct: 238 ttttggaaatcccttttctgtataaaaataagct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)