BAC Information

Click to search

BAC

Clone NameMSMg01-057A04
Chromosome3 (Build37)
Map Location 83,068,639 - 83,069,072
singlet/doubletsinglet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057A04.T7 (MSMg01no057_a04.b1)MSMg01-057A04.TJ (MSMg01no057_a04.g1)
ACCAG284274AG284275
length666676
length of high quality
(start - end)
437 (10 - 446)439 (55 - 493)
definitionCHROMAT_FILE: MSMg01no057_a04.b1 PHD_FILE: MSMg01no057_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:49 2005CHROMAT_FILE: MSMg01no057_a04.g1 PHD_FILE: MSMg01no057_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATGAGATCCGCGGAATTCTTTGTCACGTTCGCTAAAATTGTCTGACTTA
TGGATCAGAGCATGATCTCTCTCTTGATACTGTTCAGGGAGTCATCATGT
GTGGTTCCATGTTGGTTTGGTCTGTGGAGCCTAATATAGAATCAATGGCC
CTGTACAGATTTGACTTAATGGTATTCATTATTATTAATAGAATAGAGTT
CCATATTCTTATATCTTCAAACGCATACCATCTTCCTCTTCTTCACAGAA
TGATTCTGACGATGGCTACAAACTATTTTTGAAATATTTAAAAATAAGAT
TAAATATACATAATGAAGCCATGTTTACATTATTGCTGTTCTTTTATGTC
TATTTAAGGTTCGGTGGCTAAAGAAAATTATAGTCTTTATAGAGAAACTC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTCAGT
TGTACCCAAAGGTTGACTCATACATGTGTCTCAGTGCTGCTATAATTACC
ATCCCGAACATAAACAACTAGATAACTGACACACGCTGCGTTGAATAATA
AAACATGAAGCCTGCCTTTAATTTGGGTACTTTATGAGAAAACAAATTTA
GACCATGCCCCACCTGATGCCCAGTGTATTTTGGGTTGGATTGGTGAAAC
CTGTAATTCTTACTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCACAGCACTCCACCCTCCAGACAGCTTGTGCATTCCATTCACCCTC
CTCTTCCAGGACGCTCCATGTGCTTTCAAGGGTGTGATGCCAATATCCTG
TTTAAGGCTAAGCACTAAAGAGTCATTTATTTTCGACACTTTGGCTTGTT
GTTTCTCCAGAAATAGCCACCCACTAGAAAAGCAAGTTTCCGTAACCACA
ACTAAGAGCAGCACTAAACTGTGGACATAAGCATAAATATTTAGAAGACA
ATTTGACAGATACATCGTGCTCACTTGGCGAAACAATAGCAGTGGCTTCC
CCACTAGGGCTTATAACTTTCCCCAAACATGGACGTTTGGCCAGTTTTAT
GGTAACAGACATAACCTCCCTTCTGTGAAGCAGGGCCTCGAATCAGTCGA
GAATCAGCTAGTTATGCCAATAATAGTCTGCCTATGATTGGCCCAGTGGG
TAGGTTTTGCTTGGCCCCTTCATGTATTTTTGAAGTGCTTTGATTTATGA
CTTCCTTTGTTCCTTTAATATAAAAACTGCCCTGAAACGTGCCACGTTTG
AGCAATGGGATTTGAGAAAACCTGTACCTCTGTTCCGCGGGTATGCTCAA
TCATTTGGTTACCGAACAAACTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_a04.b1 MSMg01no057_a04.b1 CHROMAT_FILE:
MSMg01no057_a04.b1 PHD_FILE: MSMg01no057_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:49 2005
         (437 letters)



>mm_chr3_83068609_83069445
          Length = 837

 Score =  793 bits (410), Expect = 0.0
 Identities = 428/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtcacgttcgctaaaattgtctgacttatggatcagagcatgatctctct 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggaattctttgtcacgttggctaaaattgtctgacttatggatcagagcatgatctctct 405

                                                                       
Query: 64  cttgatactgttcagggagtcatcatgtgtggttccatgttggtttggtctgtggagcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cttgatactgttcagggagtcatcatgtgtggttccatgttggtttggtctgtggagcct 345

                                                                       
Query: 124 aatatagaatcaatggccctgtacagatttgacttaatggtattcattattattaataga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatatagaatcaatggccctgtacagatttgacttaatggtattcattattattaataga 285

                                                                       
Query: 184 atagagttccatattcttatatcttcaaacgcataccatcttcctcttcttcacagaatg 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 284 atagagttccatattcttatatcttcaaacgcataccatctttctcttcttcacagaatg 225

                                                                       
Query: 244 attctgacgatggctacaaactatttttgaaatatttaaaaataagattaaatatacata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 attctgacgatggctacaaactatttttgaaatatttaaaaataagattaaatatacata 165

                                                                       
Query: 304 atgaagccatgtttacattattgctgttcttttatgtctatttaaggttcggtggctaaa 363
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 164 atgaagccatgtttacattattgctgctctttaatgtctatttaaggttcggtggctaaa 105

                                                                       
Query: 364 gaaaattatagtctttatagagaaactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 104 gaaaattatagtctttatagagaaactcgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgt 45

                         
Query: 424 gtgtgtgtttgtgt 437
           |||||||| |||||
Sbjct: 44  gtgtgtgtgtgtgt 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)