Query= MSMg01no057_c04.b1 MSMg01no057_c04.b1 CHROMAT_FILE:
MSMg01no057_c04.b1 PHD_FILE: MSMg01no057_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:59 2005
(538 letters)
>mm_chr3_152438538_152439477
Length = 940
Score = 978 bits (506), Expect = 0.0
Identities = 530/538 (98%), Gaps = 2/538 (0%)
Strand = Plus / Minus
Query: 3 ggaattctgcagattac-ccatctaaaataatgcacagaagcaagagaagagaaccaaga 61
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggaattctgcagattacacaatctaaaataatgcacagaagcaagagaagagaaccaaga 681
Query: 62 gcgaaagagcaaatggaggccacacaacagttaaggcaggacgtccggacagtgactgac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcgaaagagcaaatggaggccacacaacagttaaggcaggacgtccggacagtgactgac 621
Query: 122 tgaaaggctctaaacacttggaccaaaaggcagagaataaaaccatggtgaataaaagca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaaaggctctaaacacttggaccaaaaggcagagaataaaaccatggtgaataaaagca 561
Query: 182 ggaaacataatagtgttcgtgtgactcgggctccgaggcactgaggagctgaccagggag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaaacataatagtgttcgtgtgactcgggctccgaggcactgaggagctgaccagggag 501
Query: 242 tgcacgagacagcatgttctcttcaagcattctggtag-cgaatgaacgtggtcacaccc 300
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct: 500 tgcacgagacagcatgttctcttcaagcattctggtagacgaacgaacgtggtcaaaccc 441
Query: 301 agtttagccatcagatacatagctctgatctgatccatgaggtctgagcacctaccctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 agtttagccatcagatacatagctctgatctgatccatgaggtctgagcacctaccccac 381
Query: 361 accaggcactgctcacgtgccaagtacaatcccagaaggacagacaggagccttgaagct 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accaggcactgctcaggtgccaagtacaatcccagaaggacagacaggagccttgaagct 321
Query: 421 ggcaatgcagtgtgacggaccaacagtgaacagtgatgtgcaaacacacttacattcccc 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcaatgcagtgggacggaccaacagtgaacagtgatgtgcaaacacacttacattcccc 261
Query: 481 aagaactctgtaccctcttcaacttcactctgatctctagccatagagataaataaat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagaactctgtaccctcttcaacttcactctgatctctagccatagagataaataaat 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 940
Length adjustment: 10
Effective length of query: 528
Effective length of database: 930
Effective search space: 491040
Effective search space used: 491040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_c04.g1 MSMg01no057_c04.g1 CHROMAT_FILE:
MSMg01no057_c04.g1 PHD_FILE: MSMg01no057_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:59 2005
(401 letters)
>mm_chr3_152289888_152290688
Length = 801
Score = 694 bits (359), Expect = 0.0
Identities = 389/399 (97%), Gaps = 3/399 (0%)
Strand = Plus / Plus
Query: 1 tacctagtttctggggaggctgaggcaggaggatcccatgttaaaggccacccagagcta 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tacctagttcctggggaggctgaggcaggaggatcccatgttaaaggccacccaaagcta 260
Query: 61 cagagtggagtcaagaccaacctgggcaacttagtgagactgtgccccagaatataaaat 120
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 261 cagagtggagtcaagaccaacctgggcaactcagtgagactgtgacccagaatataaaat 320
Query: 121 gtagtcagagcagggatatagcttgatggtactaagcttgcctgtcagacccaatgtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gtagtcagagcagggatatagcttgatggtactaagcttgcctgtcagatccaatgtcct 380
Query: 181 aggttcagttcccagtgcctggcccttctgccccaaaagatataataaatggcttgatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttcagttcccagtgcctggcccttctgccccaaaagatataataaatggcttgatag 440
Query: 241 aatttggattttagaacagggggtt-ggggctgggacagtgggcaaaaacacttgctgcc 299
||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||
Sbjct: 441 aatttggattttagaacagggggttagggg-tgggacagtgggcaaaaacactcgctgcc 499
Query: 300 caggctgacagtctgagtttgatcctcaggacccacatgtt-ggaagcagagctgacttc 358
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 500 caggctgacagtctgagtttgatcctcaggacccacatgtttggaaggagagctgacttc 559
Query: 359 atgttatatgtcctctgaaccttttcacacatttggtgg 397
|||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgttatatgtcctctgaaccttttcacacatttggtgg 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
