BAC Information

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BAC

Clone NameMSMg01-057I19
Chromosome3 (Build37)
Map Location 86,894,421 - 86,894,853
singlet/doubletsinglet
Overlap geneKirrel1
Upstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897
Downstream geneLOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057I19.T7 (MSMg01no057_i19.b1)MSMg01-057I19.TJ (MSMg01no057_i19.g1)
ACCAG284678AG284679
length712711
length of high quality
(start - end)
564 (62 - 625)435 (64 - 498)
definitionCHROMAT_FILE: MSMg01no057_i19.b1 PHD_FILE: MSMg01no057_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:32 2005CHROMAT_FILE: MSMg01no057_i19.g1 PHD_FILE: MSMg01no057_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCTAATGCAAGAAGAGCGCGGAATTCTCA
CCTGTGCCTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCCACTTCAC
TCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAGG
CTTGTACAGCCACTCTAGGAATCAGTCTGGCAGTTCCTCAGAAAATTGGA
CATAGTACTACCGGATGATCCAGCAATACCTCTCATCCAGAAGATGTCCC
AACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCACCACCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGG
ATACAGAAAACGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAA
AAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCA
TCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTAC
TCACTGATAAGTGGATATTAGCCCATATCCTAGGATACCCAAGATATAAG
ATACATTTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGT
GGACCCTATGCC
ATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAGAAATTCCAGGAATTCAACACTACAGAGGGAAGCTCCTGT
GCACCACAGGCTTCAGTTAGTTTTAAGATATCAATATTAGAATATCTGTT
ATAATACGATTTCTACACTCCTGTAAGATGTAATAATGGGGGGAAGCTGT
GGTAGAGAGGAGAAACTACCTTTCTGTTTGATTTTTCTGTAAATTGCAGA
AAGCTATTTAAAATACCCAACTACTTTACAATGAAGTTGGAATAGGGAGG
GAGATGCACTTTAAAGGTCTACCCTTTGGTGTCTCTGAGAGCAGAGGTGG
GGCTTTTAGCCTTGACTCCCATCTTCCCTCACCCCCAGGAGCTGCTGAAG
GATGGGAAAACCCAGACCACAATCAGCCAACTGCTCATTGAGCCCACAGA
CCTAGACATTGGCCGCGTATTCACCTGTCGCAGTATGAATGAGGCCATCC
CCAATGGCAAGGAGACATCCATTGAGCTTGATGTGCACCGTGAGTAGGGC
ATTGGGTAGGCTACGTGAAGTGTGGACATAGCAGCCTGAGAAGTACAGAA
TAAGGAAGGAGCCTAGGGGTCCAGGACTAATGTTCCTCTCATTTCCTGTG
TTATGCCCTGGGCAACATTGGTTGGTGCGCGGAGTATTGAGTATAGTATT
GTACCTGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_i19.g1 MSMg01no057_i19.g1 CHROMAT_FILE:
MSMg01no057_i19.g1 PHD_FILE: MSMg01no057_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:32 2005
         (435 letters)



>mm_chr3_86894019_86894853
          Length = 835

 Score =  793 bits (410), Expect = 0.0
 Identities = 428/434 (98%), Gaps = 1/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttccaggaattcaacactacagagggaagctcctgtgcaccacaggcttcagttagtttt 61
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 835 ttccaggaattcaacactacagagggaagctcgtgtgcaccacaggcttcagttagtttt 776

                                                                       
Query: 62  aagatatcaatattagaatatctgttataatacgatttctacactcctgtaagatgtaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aagatatcaatattagaatatctgttataatacgatttctacactcctgtaagatgtaat 716

                                                                       
Query: 122 aatggggggaagctgtggtagagaggagaaactacctttctgtttgatttttctgtaaat 181
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aat-gggggaagctgtggtagagaggagaaactacctttctgtttgatttttctgtaaat 657

                                                                       
Query: 182 tgcagaaagctatttaaaatacccaactactttacaatgaagttggaatagggagggaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgcagaaagctatttaaaatacccaactactttacaatgaagttggaatagggagggaga 597

                                                                       
Query: 242 tgcactttaaaggtctaccctttggtgtctctgagagcagaggtggggcttttagccttg 301
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgcactttaaaggtctgccctttggtgtctctgagagcagaggtggggcttttagccttg 537

                                                                       
Query: 302 actcccatcttccctcacccccaggagctgctgaaggatgggaaaacccagaccacaatc 361
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 536 actcccatcttccctcacccccaggagctgctgaaggatgggaaaagggagaccacaatc 477

                                                                       
Query: 362 agccaactgctcattgagcccacagacctagacattggccgcgtattcacctgtcgcagt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agccaactgctcattgagcccacagacctagacattggccgcgtattcacctgtcgcagt 417

                         
Query: 422 atgaatgaggccat 435
           ||||||||||||||
Sbjct: 416 atgaatgaggccat 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)