BAC Information

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BAC

Clone NameMSMg01-057K06
Chromosome3 (Build37)
Map Location 5,623,828 - 5,624,222
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620283, Zfhx4, Pxmp3, EG620382
Downstream geneEG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057K06.T7 (MSMg01no057_k06.b1)MSMg01-057K06.TJ (MSMg01no057_k06.g1)
ACCAG284748AG284749
length699685
length of high quality
(start - end)
492 (37 - 528)395 (53 - 447)
definitionCHROMAT_FILE: MSMg01no057_k06.b1 PHD_FILE: MSMg01no057_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:39 2005CHROMAT_FILE: MSMg01no057_k06.g1 PHD_FILE: MSMg01no057_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCT
ACTTCTCTAGGGGATATGGGACTGTTTATATCATTAATTTGATCCTGATT
TAAATTTGGTTCCTGGTATCTTTCTAGAATTTGCCCATTTTATCCAGGTT
TTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGTAGGATCTGATGATGTTT
TGAATTTCTTCAATTTTTGCTGTTATGTCTCCCTTCTCATTTCTGATTCT
GTTAATTAGAAAACTGTCCTGTGCCCTCTAGTGAGTCTATCTATCTTGTT
GATTTTCTCAAAAGAATAAGCTCCTGGTTTGGTTAATTCTTTAATAGTCC
TTTTTGTTTCCACTTGGTTGATTTCAGTGCTGTTTGATTATTTCTGGCCA
TATACTCCTCCCGAGTGTATTTGCTTTCCTTTGTTCTAGAGCTTTTAGGT
ATGCTGTCAAGCTGCTACTGTATGCTCTGTTTAGTTTCTTTTTGGTGGCA
CTCAGAGACTTCAGTTTTCCTCTTAGGACTGCTTTCATTGTGTCCCATAA
TTTTGTGTAAGTTGTGGCTTCATTATCATTTAAACTTCTAAATGTCCTTA
AATCTCCTTCATTTCTTTCTTAACTAAAGTTTCACTGAGTAGAGTGTTCT
TAAGCTTTCCACTGAAAGTTGGCTTTCTAATAAATTATGTTGCTATTGA
GGCGGCGCCTGTTCACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTGGTTTTCAGAATTCATAAAGAAAAGAATATTTTGTTTTTATATTTT
TCCAAACATAAAACCTCTTGAGTTTCTTAGAAGCAGCACATATGGAGAAA
GTGACTCCAAAGAGATATTGAGCCTCACATATTAAAAATAAAGTGCTGGG
TTGCATCCAGAAGTAAATTGGTAATTGTGGTAAATTGTAGATACTGAAAT
CTCACCCTTAGCTGTCTCTTGATCTTAACCAGGTCATGCTAGTGACTGCC
AAGAACCCAAGCTTGACACTTCGTCTTGAGTCAGCAAATCTGGGTGGCTA
GCTGAGAAGTTGCTTAAGAAGTTCCAATAATTTGAAAATAATCAACACAA
AGTTTTTCCCTTAATGTTTACTCTGGGGGGAGCAAATATCAATTTTAGAG
CGCTGTTGACACTCTTTAGGGACTTTAGAGACAGTACATGAAGGAACTGG
CCTGAACTTGTGCTCACAGATCTAAAATTTAAGACTGCTTGAAAAGAACA
TAAATAAGAACAGCCTTGGTTCCTAAGATTACAGAAATCTTCTTTACAAA
CTCCATCGTAATGTCTTGAATAGGACTTTTGAGTCCTAACTTCCTCTATT
TAGAATCTTCCCCCATGGTCTTTAAAAAAAGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_k06.g1 MSMg01no057_k06.g1 CHROMAT_FILE:
MSMg01no057_k06.g1 PHD_FILE: MSMg01no057_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:39 2005
         (395 letters)



>mm_chr3_5623628_5624422
          Length = 795

 Score =  733 bits (379), Expect = 0.0
 Identities = 391/395 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggttttcagaattcataaagaaaagaatattttgtttttatatttttccaaacataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggttttcagaattcataaagaaaagaatattttgtttttatatttttccaaacataaa 260

                                                                       
Query: 61  acctcttgagtttcttagaagcagcacatatggagaaagtgactccaaagagatattgag 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 acctcttgagtttcttagaagcagcacatatggagaacgtgactccaaagagatattgag 320

                                                                       
Query: 121 cctcacatattaaaaataaagtgctgggttgcatccagaagtaaattggtaattgtggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcacatattaaaaataaagtgctgggttgcatccagaagtaaattggtaattgtggta 380

                                                                       
Query: 181 aattgtagatactgaaatctcacccttagctgtctcttgatcttaaccaggtcatgctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgtagatactgaaatctcacccttagctgtctcttgatcttaaccaggtcatgctag 440

                                                                       
Query: 241 tgactgccaagaacccaagcttgacacttcgtcttgagtcagcaaatctgggtggctagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgactgccaagaacccaagcttgacacttcgtcttgagtcagcaaatctgggtggctagc 500

                                                                       
Query: 301 tgagaagttgcttaagaagttccaataatttgaaaataatcaacacaaagtttttccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgagaagttgcttaagaagttccaataatttgaaaataatcaacataaagtttttccctt 560

                                              
Query: 361 aatgtttactctggggggagcaaatatcaatttta 395
           |||| ||||||||||| ||||||||||||||||||
Sbjct: 561 aatgcttactctggggagagcaaatatcaatttta 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)