Query= MSMg01no057_m09.b1 MSMg01no057_m09.b1 CHROMAT_FILE:
MSMg01no057_m09.b1 PHD_FILE: MSMg01no057_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:50 2005
(635 letters)
>mm_chr3_10773103_10774137
Length = 1035
Score = 1181 bits (611), Expect = 0.0
Identities = 626/631 (99%)
Strand = Plus / Plus
Query: 5 gaattcttccttttccggggagaagataaagatgctatttgaattcccacctgatgtggt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccttttcaggggagaagataaagatgctatttgaattcccacctgatgtggt 264
Query: 65 cattctagcttccatgtgtgtaaacttgatacttggggaattcaatatgttcttgttcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattctagcttccatgtgtgtaaacttgatacttggggaattcaatatgttcttgttcaa 324
Query: 125 tagccttctctgagacatggaaaaggaggaaaaatactgaattctgtaacatttaagtag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagccttctctgagacatggaaaaggaggaaaaatactgaattctgtaacatttaagtag 384
Query: 185 gaaaaaatggcattctcttgttgccaaagaaaaagtcttagcactagacttaaaacaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaaaatggcattctcttgttgccaaagaaaaagtcttagcactagacttaaaacaaca 444
Query: 245 gtatttgtcatttcttgtgattttgtattgggcaagtatttcttcagtgatgtgcggggt 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 gtatttgtcatttcttgtgattttgtattgggcaagtatttcttcagtgatgtgtggggt 504
Query: 305 cacctcagctgtgctctgggctgatagtatggcctggacatctgattctctccctagagt 364
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 caccgcagctgtgctctgggctgatagtatggcctggacacctgattctctccctagagt 564
Query: 365 cttgtcctacagtttttccatcggttctttctctaggagactcttcttcagctctttgca 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 cttgtcctacagtttttccatcggttctttctctaggaaactcttcttcagctctttgca 624
Query: 425 acacataggatgaatcctaatgagaaaagaactcagaacaagaacttataaagcccctgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacataggatgaatcctaatgagaaaagaactcagaacaagaacttataaagcccctgc 684
Query: 485 tttgccacttttggtaatggtggccaccaagtcccatgtctaagtacagaaacattacgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgccacttttggtaatggtggccaccaagtcccatgtctaagtacagaaacattacgg 744
Query: 545 gacagattcaccttcaatgtggtaagtaggaggcatggctctttaggaagtactagtgtg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacagattcaccttcaatgtggtaagtaggaggcatggctctttaggaagtactagtgtg 804
Query: 605 gtgtctagcctacagagggatttctgaaact 635
|||||||||||||||||||||||||||||||
Sbjct: 805 gtgtctagcctacagagggatttctgaaact 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_m09.g1 MSMg01no057_m09.g1 CHROMAT_FILE:
MSMg01no057_m09.g1 PHD_FILE: MSMg01no057_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:50 2005
(616 letters)
>mm_chr3_10852547_10853563
Length = 1017
Score = 849 bits (439), Expect = 0.0
Identities = 466/475 (98%), Gaps = 3/475 (0%)
Strand = Plus / Minus
Query: 144 cctcaaggattctaaacaaggtggagcacagatgcctcagtgaaaactctgctccataat 203
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1017 cctcaaggattctaaacaaggtggagcacagatgcctcggtgaaaactctgctccaaaat 958
Query: 204 ctactttcagttaccttcccatctgcttctgtctaggtctgttcattcccttactcaaat 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ctactttcagttaccttcccatctgcttctgtctaggtctgttcattcccttactcaaat 898
Query: 264 attctgccatcacctcccaaatgagctattattaaatacaattttaatggtgtgattttg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 attctgccatcacctcccaaatgagctattattaaatacaattttaatggtgtgattttg 838
Query: 324 acagaactcaaggtatgacaaaaatcccattaaatgaaacatgttctctcttcatttcta 383
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 837 acagaactcaaggtatgacaaaaatcccatcaaatgaaacatgttctctcttcatttcta 778
Query: 384 gaatatactcaaactaattttaataaactgagtggttattagagcaattggtctttctac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaatatactcaaactaattttaataaactgagtggttattagagcaattggtctttctac 718
Query: 444 aagccgataatcctcatccgttttcagacataattt-cttttcttactacagaatgagat 502
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 717 aagccgataatcctcatccattttcagacataattttcttttcttactacagaatgagat 658
Query: 503 gcatatgcagataacttttaatccaatatctgattcctcccctaactaaaaagaatgttt 562
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 657 gcatatgcagataa-ttttaatgcaatatctgattcctcccctaactaaaaagaatgttt 599
Query: 563 caaaggatatctatttaagtacttt-ttatggaaaagaattcaatattaataata 616
||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 598 caaaggatatctatttaagtactctgttatggaaaagaattcaatattaataata 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
