Query= MSMg01no057_p07.b1 MSMg01no057_p07.b1 CHROMAT_FILE:
MSMg01no057_p07.b1 PHD_FILE: MSMg01no057_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:05 2005
(639 letters)
>mm_chr3_45932310_45933348
Length = 1039
Score = 1172 bits (606), Expect = 0.0
Identities = 627/634 (98%)
Strand = Plus / Minus
Query: 6 gaattctgttgatcgtcctttgagatacatttaaattgtggttagggaagattttcttta 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattctgttgattgtcctttgagatacatttaaattgtggttagggaagattttcttta 606
Query: 66 ccatctaactcacttgatataatatttttctctcaattgagtagtaactttccttcatca 125
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 605 ccatctaactcacttgatacaatatttttctctcaattgagtggtaactttccttcatca 546
Query: 126 aacttctcatccaagaattttatccttcattttctctttggaattttagttccttggatt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aacttctcatccaagaattttatccttcattttctctttggaattttagttccttggatt 486
Query: 186 cacagaactcattttattatttgaatccatattacccagagcagataattttcattgcct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacagaactcattttattatttgaatccatattacccagagcagataattttcattgcct 426
Query: 246 tgttttcaagtttactgacactttccaaatttttataccattaaatccattctaacccaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgttttcaagtttactgacactttccaaatttttataccattaaatccattctaacccaa 366
Query: 306 caaatgacagatcttatacattctaatttctttatttgattctgtcctatgcttgtcatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caaatgacagatcttatacattctaatttctttatttgattctgtcctatgcttgtcatt 306
Query: 366 ttcacacataatttgactcatttacttacatttgcttactcataatgattaaaatagatt 425
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttcatatataatttgactcatttacttacatttgcttactcataatgattaaaatagatt 246
Query: 426 tatggaaaaattgttttataattccctgagtcatcacaatcatacatacatgcatgcata 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 245 tatggaaaaattgttttataattccctgagtcatcacaatcatacatacatgcatacata 186
Query: 486 catacaccaaatgcaaacaaccatgtgcacaggcacacctctggtctctctattatgcag 545
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 catacaccaaatgcaaagaaccatgtgcacaggcacacctctggtctctctattatgcag 126
Query: 546 acatcaccactcagcacccatcgctttgttctctgtatgaactggctttgggaatataaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 acatcaccactcagcacccatcgctttgttctctgtatgaactggctttgggaatataaa 66
Query: 606 ctgatggttatgtacttttgagaaaattgtgaga 639
||||||||||||||||||||||||||||||||||
Sbjct: 65 ctgatggttatgtacttttgagaaaattgtgaga 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_p07.g1 MSMg01no057_p07.g1 CHROMAT_FILE:
MSMg01no057_p07.g1 PHD_FILE: MSMg01no057_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:05 2005
(545 letters)
>mm_chr3_45779466_45780407
Length = 942
Score = 988 bits (511), Expect = 0.0
Identities = 536/545 (98%), Gaps = 3/545 (0%)
Strand = Plus / Plus
Query: 1 actaaaccctagtttgttgaatcaataagtttacttatacgtgaattcacaagaagatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaaccctagtttgttgaatcaataagtttacttatacgtgaattcacaagaagatac 260
Query: 61 acataagaacaagggcattttatgggcagttacagccccacaaaacatttccacagggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acataagaacaagggcattttatgggcagttacagccccacaaaacatttccacagggag 320
Query: 121 atacatttaataattatgccctctccttcatcatggaatgctaatatttgaatatgtaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacatttaataattatgccctctccttcatcatggaatgctaatatttgaatatgtaag 380
Query: 181 taggagtttggtaagaagtgttttgtgtccttactattctcagcttcccttagtctccca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 taggagtttggtaagaagtgttttgtgtccttactattctcagcttccctta-tctccc- 438
Query: 241 tagttatagataagcagaaaaccaagataatatgacaatatgattgagtagagtctgtta 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 -agttatagataagcagaaaatcaagataatatgacaatatgattgagtagagtctgtta 497
Query: 301 tataaatggtactatgtgaagtttttaaatgcttactaacgaaataccagagtgcacatt 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 498 tataaatggtactatgtgaagtttttaaatgcttactaatgaaataccagagtacacatt 557
Query: 361 tagatatgtgtttatgtgtattatttttgagaaagtaacctttgccagtgaatgctcata 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 558 tagatatgtgtttatgtgtattatttttgagaaagtaacctttgccactgaatgttcata 617
Query: 421 atgtttaaaaaggatgattattggcctagaataactcgctttgtgatgtctcaaatataa 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgtttaaaaaggatgatcattggcctagaataactcgctttgtgatgtctcaaatataa 677
Query: 481 agagatgaaaatgtgaaaatgacacaggttcagtagacactgcactccacactgttttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agagatgaaaatgtgaaaatgacacaggttcagtagacactgcactccacactgttttct 737
Query: 541 aggtt 545
|||||
Sbjct: 738 aggtt 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 942
Length adjustment: 10
Effective length of query: 535
Effective length of database: 932
Effective search space: 498620
Effective search space used: 498620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
