BAC Information

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BAC

Clone NameMSMg01-058N09
Chromosome3 (Build37)
Map Location 158,597,012 - 158,597,203
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd13c, Sfrs11, Lrrc40, Lrrc7, LOC100041008
Downstream geneLOC668905, LOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058N09.T7 (MSMg01no058_n09.b1)MSMg01-058N09.TJ (MSMg01no058_n09.g1)
ACCAG285656AG285657
length707705
length of high quality
(start - end)
192 (124 - 315)553 (75 - 627)
definitionCHROMAT_FILE: MSMg01no058_n09.b1 PHD_FILE: MSMg01no058_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:11 2005CHROMAT_FILE: MSMg01no058_n09.g1 PHD_FILE: MSMg01no058_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTTGCGAAATGGAAATTGGTTTTCCCTGGATCACTGATCCAA
TCACTTCTGAAACATGTACCCTGTGACTGCAAGGTATGATTTGTTTGATG
AAGGTGAGAGAGTAAAGCCACAATTAGTGCATTCGTGGATTTTTTTCAAT
ATAGAAATATATACTTAAAAATAAAACTTTCTCAAAGGAAATAACCTGCC
TCTCTTTGGTTCTCTGGTAAGATAATACTGCAACTTATAGGAAGTCACAC
TAAAATGAGCTGAATTGATCTTATTAATAGGACTGTCTACTGGAGACAAA
TTACTCTTTTTTTTTGCCCCCGCCCTATGATTATATATCTTAGACATTTT
TCTGAAGCCCACAGAAGAACTTTAAAGTGTGTTGAATTAATTTCAAAATG
GAATTTTTCTTTGTCCAATTGATGTGTTGTGAAAATGGATCCTGTGCTAT
TAAAGAGGAACAGAAACACCTCCTAGAACATTATGTTTAGAAAGCACTCA
TCCATTTAGTCACATAGATTCCTGAAGAAGCTAGACATTTCATTGCATAG
TAATGGATCCATGACAACTGCTCTCCTCCAGAACTATGAGCATCTATTTT
TTCAGTTTCTTGGAGAATATGATCCTAGATGCCCTACTGATTTTTTTGGT
CTCATTA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGTGTGGATCTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGTTTGTACAACCACTCTGGAAAT
CAGTCTGGAGGTTTCTCATTATATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCCTAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACCATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCT
AAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_n09.b1 MSMg01no058_n09.b1 CHROMAT_FILE:
MSMg01no058_n09.b1 PHD_FILE: MSMg01no058_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:11 2005
         (192 letters)



>mm_chr3_158596812_158597403
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactgcaaggtatgatttgtttgatgaaggtgagagagtaaagccacaattagtgcatt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgactgcaaggtatgatttatttgatgaaggtgagagagtaaagccacaattagtgcatt 333

                                                                       
Query: 61  cgtggatttttttcaatatagaaatatatacttaaaaataaaactttctcaaaggaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cgtggatttttttcaatatagaaatatatacttaaaaataaaactttctcaaaggaaata 273

                                                                       
Query: 121 acctgcctctctttggttctctggtaagataatactgcaacttataggaagtcacactaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 272 acctgcctctctttggttctctgttaagataatactgcaacttataggaagtcacactaa 213

                       
Query: 181 aatgagctgaat 192
           ||||||||||||
Sbjct: 212 aatgagctgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)