BAC Information

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BAC

Clone NameMSMg01-058O10
Chromosome3 (Build37)
Map Location 37,420,498 - 37,570,967
singlet/doubletdoublet
Overlap geneSpata5, LOC665778, Spry1
Upstream geneLOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058O10.T7 (MSMg01no058_o10.b1)MSMg01-058O10.TJ (MSMg01no058_o10.g1)
ACCAG285706AG285707
length719727
length of high quality
(start - end)
286 (75 - 360)147 (128 - 274)
definitionCHROMAT_FILE: MSMg01no058_o10.b1 PHD_FILE: MSMg01no058_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:16 2005CHROMAT_FILE: MSMg01no058_o10.g1 PHD_FILE: MSMg01no058_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,570,682 - 37,570,967)(37,420,498 - 37,420,644)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCG
GAATTCCAGAATTTCACAGAAATGTTCCAGAGACCTAAATAAACAGTCAT
GGAAAAAAAAAATCACAGCAGCATATATGCTTATAGGTTGATTTGAAAAC
ATTAAGAATTTATGAGAGCAATATTCTATATTCAAAATTGTTAAAGTTCT
TGAGCATTGACTATAAAAAATTTGTCTAGTTGGTTGGGCATGGTGGCACA
CATAATCCCAGCACTTGGAAGACTGGAGGCAAAAAGATCATGAGCTTGGA
ACCAATTTGAGCTACAGAATGTTTTCCAACCAACCTGGGCTAAGAAAAGG
CCCTGCTTGGTAGGGGGAAAAGCTAAGTCAATTTTAATATAGAGAAAGCA
AAATTCTCTTACTGAAGAACTAAAGAACATATATTTTGCTGGGACTTCTT
CATGTGCCTATTTATGTAGGTCTCTGAACATCTCCCCATTTCTTCTGAAA
TGCTAACTATTTGGCATAGTGGGACACAGAGTTGGCGTGGTGTCAGTGTG
ATCAACCCCCCACCCCGAAGCTGTTCAACTGAAATGATATGCTTATAGAC
ATTTGTTTTTCAGACATGTATCCCTACTTAGGGATCATTGCTGTGGTGAA
ATATCGTGATCTAAAGCACCTTAAGGAGTAAAGGGCCTCTATTCTCTTCC
TACACATTCCAGGAAAAAT
AATTAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCAAAAAAAGTCTTTATGTACAAGTCATAGAAAAAGTATT
CGTTTTATAAAGATCTTCCCCACTTAGGTGATCATATAATGTTTGCTATG
GAGGATGGCATGTATACCCTTAGAAATGGGTGACTTCACCGAGTACTCAT
CACTCTGGATATATCTACTCTCATATCCCAGAACAATCCTTAAAAAAAGA
ATTTAGGTGTGTTAATTCATTCAGAGCTCTGCACGAAGGAAGGCTCTTTC
CTGCTCTTTTAAATTTTTTTTTTGACTGACAAGATCAGACCAGAAAAGGC
CTCTTTTTTTTTTCCCCCCCCCCCCACTAANGTCACTCATCCTGCACTGT
CCTATATAGCTTTATCTGAATAAAACAAAAATGTATGTTGGGCAATCCAG
CACGCAAGCTATGGTTTCTTTTTTGTTTGGCTTTTGTTTTTTTATATAAA
TGAGGATACTTTTATTGAAATTTACTCAATCTTAAACTTATGGCAATTCT
GACTTAAACTACTACTTAGTTTGATCCTTAAATTTCTGTCTACCTGACTT
ACCACAGTCTCAAAATATTACACATATTTCCTCTCCTTCCCCATTTGCTC
ATTTATCTTATTCTTCACAAATTCTGCCTACAGACCCACAATTACTTGTG
TGCTAGTTTTTTTGACATTTTTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_o10.b1 MSMg01no058_o10.b1 CHROMAT_FILE:
MSMg01no058_o10.b1 PHD_FILE: MSMg01no058_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:16 2005
         (286 letters)



>mm_chr3_37570610_37571295
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccagagacctaaataaacagtcatggaaaaaaaaaatcacagcagcatatatgcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttccagagacctaaataaacagtcatggaaaaaaaaaatcacagcagcatatatgcttat 299

                                                                       
Query: 61  aggttgatttgaaaacattaagaatttatgagagcaatattctatattcaaaattgttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aggttgatttgaaaacattaagaatttatgagagcaatattctatattcaaaattgttaa 239

                                                                       
Query: 121 agttcttgagcattgactataaaaaatttgtctagttggttgggcatggtggcacacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agttcttgagcattgactataaaaaatttgtctagttggttgggcatggtggcacacata 179

                                                                       
Query: 181 atcccagcacttggaagactggaggcaaaaagatcatgagcttggaaccaatttgagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atcccagcacttggaagactggaggcaaaaagatcatgagcttggaaccaatttgagcta 119

                                                         
Query: 241 cagaatgttttccaaccaacctgggctaagaaaaggccctgcttgg 286
           |||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 118 cagaatgagctccaaccaacctgggctaagaaaaggccctgcttgg 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_o10.g1 MSMg01no058_o10.g1 CHROMAT_FILE:
MSMg01no058_o10.g1 PHD_FILE: MSMg01no058_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:16 2005
         (147 letters)



>mm_chr3_37420298_37420844
          Length = 547

 Score =  277 bits (143), Expect = 3e-79
 Identities = 146/147 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgatcatataatgtttgctatggaggatggcatgtatacccttagaaatgggtgacttc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gtgatcatataatgtttgctatggaggatggcatgtagacccttagaaatgggtgacttc 260

                                                                       
Query: 61  accgagtactcatcactctggatatatctactctcatatcccagaacaatccttaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accgagtactcatcactctggatatatctactctcatatcccagaacaatccttaaaaaa 320

                                      
Query: 121 agaatttaggtgtgttaattcattcag 147
           |||||||||||||||||||||||||||
Sbjct: 321 agaatttaggtgtgttaattcattcag 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)