BAC Information

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BAC

Clone NameMSMg01-058O14
Chromosome3 (Build37)
Map Location 91,294,105 - 91,294,620
singlet/doubletsinglet
Overlap genenone
Upstream geneSnapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058O14.T7 (MSMg01no058_o14.b1)MSMg01-058O14.TJ (MSMg01no058_o14.g1)
ACCAG285714AG285715
length705708
length of high quality
(start - end)
519 (46 - 564)481 (71 - 551)
definitionCHROMAT_FILE: MSMg01no058_o14.b1 PHD_FILE: MSMg01no058_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:17 2005CHROMAT_FILE: MSMg01no058_o14.g1 PHD_FILE: MSMg01no058_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAAGAGGATCCGC
GGAATTCTCATATTTCTAGACATCCAATTTTCATGGTGCCATAGACAAAT
AGGCTATTTTCCCCTATTAACATTTTTAACAGTTTTTTGAAAATCATGTA
TGTTAGTCCAAGCCACAGATACATAATAAAAGCAACTTATGTGTTTTTTT
TTCTTTTTTTTTAATTAGGTATTTATTTTATTTACATTTCCAGTGTAATC
CCAAAAGTACCCCACACCCTACCACAGGCACTCCCCCACCCATCCACTCC
CACTTGTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAATTTGCAT
GACCAATGGGCCTCTCTTTCCACTGATGGCAAACTAGGCCATCTTCTGAT
ACATATGCAGAGACAAGAGCTCTGGGGGGGGGTACTGGTTAGTTCATATT
GTTCCACCTATAGGGTTGCAAATCCCCCCAGTTTCTTGGGTATTTTCTCT
AGCTCCAACATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCA
TCCACTTCTGTGTTTGCTAGACCCTGGCATAGTCTCAGAAGAGACTGCTA
TATCAGTGTCCTTTCAGCAAAAGTTGCTAGTGTATGCAATGGTGTCAGCG
CTTGTAGGCTGATTATGGGATGGATTCCCGGGTATTGCAGCCTCTAGACG
GTCCA
ACTGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTACACACAAAATTCCTTGACAATGACAACACCAAAATAC
AGCTGGGCAAACTCCCAACTCTGCTTCTCCATGTCTAATGTCAAAATGCT
CTTTAGATTTTCACCCACTTTCATCTTTGCTGACCACAAAAAATGTCTTT
CTCCTTCTTCCACTCCCTTGTAACAGGCATGGTTGGCAGGTAGCCCAGGA
TTCTGGCATCTGGAACATTTTGGGGTCTCCAATGAAACTTCAGTATTACA
GCTTCTTGTTACTATATCTTGTACTCCAACACAATCTTCTGGGTTTCACA
AAGGGGTTTGGATATGTTCTTCATATCTGTCGTCTATAGCAATCTAGGCT
CCAGGTAACTCTACTTTACTACTGATGCTGTTTTGAATGAAAATTCCATG
ATAGTGGCCTTTCAAGTTCACTGCTGTCATCTACTTCAACTAGGCTATTA
GAAGTTATGGCTATTATGGAATACATGTACAAATTAAGATTGATGGTCAA
CCAGCAGAAATCTCTAGTAAAATGAAGCAATTTATTGTCTATCATAATAA
GCATATTAAAGGCATATCACAAAATCCCGTGTAACAAGCAGTTGTAGAAA
AATATATTCATATCTTAAAAGACATGCTTAATACAGAGAAAGAGTCATTA
TTAACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_o14.b1 MSMg01no058_o14.b1 CHROMAT_FILE:
MSMg01no058_o14.b1 PHD_FILE: MSMg01no058_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:17 2005
         (519 letters)



>mm_chr3_91293898_91294816
          Length = 919

 Score =  890 bits (460), Expect = 0.0
 Identities = 501/518 (96%), Gaps = 8/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   aattctcatatttctagacatccaattttcatggtgccatagacaaataggctattttcc 67
           ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aattctcatgtatgtagacatccaattttcatggtgccatagacaaataggctattttcc 267

                                                                       
Query: 68  cctattaacatttttaacagttttttgaaaatcatgtatgttagtccaagccacagatac 127
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 cctattaacatttttaacagttttttgaaaatcatgtatgttagtccaagccacagatgc 327

                                                                       
Query: 128 ataataaaagcaacttatgtgtttttttttc---tttttttttaattaggtatttatttt 184
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 328 ataataaaagcaacttatgtgtttttttttcttttttttttttaattaggtatttatttt 387

                                                                       
Query: 185 atttacatttccagtgtaatcccaaaagtaccccacaccctaccacaggcactcccccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atttacatttccagtgtaatcccaaaagtaccccacaccctaccacaggcactcccccac 447

                                                                       
Query: 245 ccatccactcccacttgttggccctggcattcccctgtactgaggcatataaaatttgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccatccactcccacttgttggccctggcattcccctgtactgaggcatataaaatttgca 507

                                                                       
Query: 305 tgaccaatgggcctctctttccactgatggcaaactaggccatcttctgatacatatgca 364
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 508 tgaccaatgggcctctctttccactgatgacagactaggccatcttctgatacatatgca 567

                                                                       
Query: 365 gagacaagagctctgggggggggtactggttagttcata---ttgttccacctatagggt 421
           ||| |||||||||||||||||  ||||||||||||||||   |||||||||||| |||||
Sbjct: 568 gagtcaagagctctggggggg--tactggttagttcataaggttgttccacctagagggt 625

                                                                       
Query: 422 tgcaaatccccccagtttcttgggtattttctctagctccaacattgggggccctgtgat 481
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 626 tgcaaatccccccagtttcttgggtactttctctagctccaacattgggggccctgtgat 685

                                                 
Query: 482 ccatccaatagctgactgtgagcatccacttctgtgtt 519
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccatccaatagctgactgtgagcatccacttctgtgtt 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)