BAC Information

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BAC

Clone NameMSMg01-059B24
Chromosome3 (Build37)
Map Location 6,109,977 - 6,110,534
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059B24.T7 (MSMg01no059_b24.b1)MSMg01-059B24.TJ (MSMg01no059_b24.g1)
ACCAG285877AG285878
length683712
length of high quality
(start - end)
578 (74 - 651)252 (79 - 330)
definitionCHROMAT_FILE: MSMg01no059_b24.b1 PHD_FILE: MSMg01no059_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:33 2005CHROMAT_FILE: MSMg01no059_b24.g1 PHD_FILE: MSMg01no059_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATAATTGCGGCGCTAAACGACTCCTATATTTCCGAGTGGGCGGA
ATTAACTTTATGTTCCCAAAATAAGGCTCAGATATTAAAAGTTTTCCTTT
AGATTACCAAAGTTTTGTGTGCACCCTTTTCCAGTTTATTTCACATTAGA
AATGCATGGATTCACCTAGTAATGCTTGTTAGGAGTAATGGTAGCCTGGA
ACCTAGTAGTGCATTTTAGTAGTATGGCAGCCTGGAAGTTTTTGAATGAC
TAAGTCTTATAGTGAAGGTAATGGTTGTCAAAAACCCTCTAAGAAATAAG
ATGGGTATTAAGAAGATAAATTGATANCTTGTCATTGTGTGTGCCTTAAA
ATCCAAATTCTTGTTATTTTATTTAATGACTTGTTTGAAATACTTAAACC
CATATTTCAGGTTCCATTTTTTTGTCTATAGACAATAATAAATGCATCAT
TTCAGAAATGATTACATTATGTGAAGAAAACCCTTTGTGAATGCTGCCTT
CACGTGAGATTGTCTGAACTCTGCTCTGCTCTCCGTTCCAAACATGATTC
AAATAGCTAGCTACTTTTTTCTTTATTTTACCTGAATTACTTGGATCCAG
CTATTCTTCTGAGAGGAATACTGCACTAAATTAATTCATTACAATGCTTG
AATGCCTAAGCTACTGGGCTTAAACTTCTGGNG
NCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAAATAATAGTGGGGAGACT
TCAGCACCCCCACTCTCTTACTTACTTACTCTCCTTCTTTCCTCCTTGAC
CAAGTTATCATTGAGTAGAGAGTTGTTCAGCTTCCATGTGTATGTAGGCT
TTATATTGGCTTTTCTTGTTATTGAAAACCAACCTTAGACCATGGTGATC
TGATTGGATGCACAGAATTATTTCAGTCTTCTTGTATCTGTTGAGGACAG
TTTTGTGACAGATTATATGGACAGTTTTGTTTTTTTATACCACGGGGTAC
TGAGAAGAAGGTATATTCTTTTGTTTTATCGACAGAATGATTTGTAGATA
TTTTTCAAATACAATTGGCTCATAGCTTCTGCTTGTTTCACTCTGTCTCT
GTTTATTTTCTGTTTCCATATGTCCATTGATGACAGTGTGCTGCTGATGT
CTCCCATCATTATTGCGTGACGTGCCTATTTTAACTCTTGATTTTTACTT
GCATTCTCTCCTCCTCAATTCTGTATGCCCTTGTATCTCGTCGCATCACC
GTTCACCTATCTTCGCCTCCTTTTCAATTGCCACTCGGCCCTTTCGCCCT
CGCTTAGCCTTTGTTCTTTCCTCGACCTGTCTATTCATCTCTTTCCTCTC
TACTCCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_b24.b1 MSMg01no059_b24.b1 CHROMAT_FILE:
MSMg01no059_b24.b1 PHD_FILE: MSMg01no059_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:33 2005
         (578 letters)



>mm_chr3_6109825_6110805
          Length = 981

 Score =  928 bits (480), Expect = 0.0
 Identities = 544/581 (93%), Gaps = 26/581 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctcagatattaaaagttttcctttagattaccaaagttttgtgtgcacccttttcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 710 aggctcagatattaaaagttttcctttagattaccaaagttttgtgtgcatccttttcca 651

                                                                       
Query: 61  gtttatttcacattagaaatgcatggattcacctagtaatgcttgttaggagtaatggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtttatttcacattagaaatgcatggattcacctagtaatgcttgttaggagtaatggta 591

                                                                       
Query: 121 gcctggaacctagtagtgcattttagtagtatggcagcctggaagtttttgaatgactaa 180
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 590 gcctggaacctagtagtgcattttagtagtatggcagcctgaaagtttctgaatgactaa 531

                                                                       
Query: 181 gtcttatagtgaaggtaatggttgtcaaaaaccctctaagaaataagatgggtattaaga 240
           |||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 530 gtcagatagtgaaggtaatggttgtcaaaaaccctctaagaaataagatgggttttaaga 471

                                                                       
Query: 241 agataaatt-gatancttgtcattgtgtgtgccttaaaatccaaattcttgttattttat 299
           ||||||||  || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agataaatacgaaatcttgtcattgtgtgtgccttaaaatccaaattcttgttattttat 411

                                                                       
Query: 300 ttaatgacttgtttgaaatacttaaacccatatttcaggttccattttttt--gtctata 357
           ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||
Sbjct: 410 ttaatgacttgtttgaaatacttaaactcatatttcaggttccatttttttttgtctata 351

                                                                       
Query: 358 gacaataataaatgcatcatttcagaaatgattacattatgtgaagaaaaccctttgtga 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gacaataataaatgcatcatttcagaaatgattacattatgtgaagaaaaccctttgtga 291

                                                                       
Query: 418 atgctgccttcacgtgagattgtctgaactctgctctgctctccgttccaaacatgattc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgctgccttcacgtgagattgtctgaactctgctctgctctccgttccaaacatgattc 231

                                                                       
Query: 478 aaatagctagctacttttttctttattttacctgaattacttggatccagctattcttct 537
           ||||||||||||||||||||||||||||||                       |||||||
Sbjct: 230 aaatagctagctacttttttctttatttta-----------------------ttcttct 194

                                                    
Query: 538 gagaggaatactgcactaaattaattcattacaatgcttga 578
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 193 gagaggaatactgcactaaattaattcattaaaatgcttga 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 981
Length adjustment: 10
Effective length of query: 568
Effective length of database: 971
Effective search space:   551528
Effective search space used:   551528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)