BAC Information

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BAC

Clone NameMSMg01-059G09
Chromosome3 (Build37)
Map Location 11,159,763 - 11,160,124
singlet/doubletsinglet
Overlap genenone
Upstream genePmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059G09.T7 (MSMg01no059_g09.b1)MSMg01-059G09.TJ (MSMg01no059_g09.g1)
ACCAG286086AG286087
length731731
length of high quality
(start - end)
687 (45 - 731)658 (74 - 731)
definitionCHROMAT_FILE: MSMg01no059_g09.b1 PHD_FILE: MSMg01no059_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:53 2005CHROMAT_FILE: MSMg01no059_g09.g1 PHD_FILE: MSMg01no059_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGAACAGTCTCGCACTATATGAGTGTCTGTATCTCTCAAGGAAAG
CACACCAAAATTATCAGACAAAAATGAGTTCAGAGGAATGGTAAACCAAC
TTGAAATGATTCTTGCATTCTTTCTTTTTTAAATATTTTGTCATATTTTT
ATTACCTTTATTTTTTTAACAGTCTAGTTGTTATCCCCCTCCTGGCCCAT
ATTCCTGCCCCATATCCCTGCACTATATCATCCCATTCCTCCTCCCCCGT
CTTCAAGGAATGTTCTCCCACCACCAGGCCTCCCTACTGTCTGGGGCCTC
AAGTCCCTCAAAGTGTTAGCTAAGTCTTCTCCCACTGAGACCACACCTGG
CAGTCCTCTGCTGAATGTGTATCAGAGGCCTCATACCAGCTAGTGTATGT
TGCCTGGACTCATTGTTCAGTGTCTGAGAGTTCCCAGGGGTCCAGGTTAA
TTGAGATGCTTGTCTTCCTATGGGGTCACCCTCCTCCTTAGATTCTTCCA
GTCTTTCCCTAATTCAACCACAGGGCTCCCCAACTTCAGTTCAATGGTTG
GGTGTAAGTATTTGCATATGTCTCAACCAGATGTTTTTTGGGCCTTTCAG
AGGAAAGCCCCTAGTGTCAGGCCTTGGAATCATCCCTTGAGATGGATCCC
AAGTCAGGCTGTTCACTGGACCACCTTTCCN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGAATTGCAAGCTGGTACAACCACTCTGGAAATC
AGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGTCTCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGCACTATTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGTGTGA
GGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATGACTGTTTCTACATCACCTCAAAAATGTCAACATCATCACACAAT
GTGGAATAAAACTCTGAGAACTGATGCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_g09.b1 MSMg01no059_g09.b1 CHROMAT_FILE:
MSMg01no059_g09.b1 PHD_FILE: MSMg01no059_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:53 2005
         (687 letters)



>mm_chr3_11159763_11160849
          Length = 1087

 Score =  545 bits (282), Expect = e-159
 Identities = 347/378 (91%), Gaps = 20/378 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaacagtctcgcactatatgagtgtctg-tatctctcaaggaaagcacacca 63
           |||||||||||||| || | ||||||||||| |||| |||||| ||||||||||| ||||
Sbjct: 362 gaattcaagaacagcct-gtactatatgagtatctgttatctcccaaggaaagcaaacca 304

                                                                       
Query: 64  aaattatcagacaaaaatgagttcagaggaatggtaaaccaacttgaaatgattcttgca 123
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 303 aaattatcagacaaaaatgagttcagagggatggtaaaccaatttgaaatgattcttgca 244

                                                                       
Query: 124 ttctttcttttttaaatattttgtcatatttttattacctttat--ttttttaacagtct 181
           |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 243 ttctttgttttttaaatattttgtcatatttttattacctttatatttttttaacagtct 184

                                                                       
Query: 182 agttgttatccccctcctggcccatattcctgccccatatccctgcactatatcatccca 241
           |||||||||||||||||||||||||||             ||||||||||| |||||| |
Sbjct: 183 agttgttatccccctcctggcccatat-------------ccctgcactatctcatccaa 137

                                                                       
Query: 242 ttcctcctccccc-gtcttcaaggaatgttctcccaccaccaggcctccctactgtctgg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttcctcctccccctgtcttcaaggaatgttctcccaccaccaggcctccctactgtctgg 77

                                                                       
Query: 301 ggcctcaagtccctcaaagtgttagctaagtcttctcccactgagaccacacctggcagt 360
           |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 76  ggcctcaagtacctcaaagtgtt--ctaagtcttctcccactgagaccacacctggcagt 19

                             
Query: 361 cctctgctgaatgtgtat 378
           ||||||||||||||||||
Sbjct: 18  cctctgctgaatgtgtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)