BAC Information

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BAC

Clone NameMSMg01-059I09
Chromosome3 (Build37)
Map Location 9,786,709 - 9,787,179
singlet/doubletsinglet
Overlap genePag1
Upstream geneMrps28, Tpd52, LOC100041389, LOC667886, Zbtb10, Zfp704
Downstream geneLOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059I09.T7 (MSMg01no059_i09.b1)MSMg01-059I09.TJ (MSMg01no059_i09.g1)
ACCAG286181AG286182
length739740
length of high quality
(start - end)
555 (43 - 597)541 (74 - 614)
definitionCHROMAT_FILE: MSMg01no059_i09.b1 PHD_FILE: MSMg01no059_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:03 2005CHROMAT_FILE: MSMg01no059_i09.g1 PHD_FILE: MSMg01no059_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAATCCGCGGAA
TTCCATCAATGCCTTCAGCAGTTATGAGTTCAGAGCAGAGCAGAGTTATG
AGAGCAGAGGCGGGGCTCAGAGGAAGTGGGCTGCTGGCGATGCCTCGAAA
GGCTGTATCTTGTCCTTACACACTTCCTCCCTGGCTCTCTGCTTCCTCAC
TGCTAGGAGGGAGCAGCTTGTCCCACCATGCCCTTCAATCCGCCTCACTA
AGTGATGATGCTTCTGACCCCACTGTGACCCCAAACACACATCTCCTGCC
GTTTCTATCAGGTTTTGTTAGAGCAACATAAAACAGACAAGTTACCCTTG
TGGCACAGTGGTCATGGTGTGACATCTAAGGGGGAACTAGCTCACACCTG
GCTGGAGCTGTGCAACTGTGGGTGCAGGCTAGCTCACACCTGGCTGGAGC
TGTGTATCTGTGAGTGCAGGCTAGCTCACACCTGGCTGGAGCTGTGTGTC
TGCACGTGCAGGGTGGCTCATACCTGGCTGGAGCTGTGTATCTGTGAGTG
CAGGCTAGCTCACACCTGGCTGGAGCTGTGCGTCTGCACATGCAGGGTGG
CTAGATGCAGAGTTACCTTAGAAGCAAGCTTGAATGACCAATATTAAAGA
TGGTGACTTAGATGAATAAATATCCTGAACTCACCAACTCCCAGCTTTGA
AGTTGTGCTCCACTGTGGAAATCACACAAAAACCTAGTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAATAAACAGACTTGGAGGAG
GAAGCAGCTCATTATGAGAGAAAAGGGTACCAGCCAGATAAAATGCTAGC
TAATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCATGCTG
TTCAGCCTCCGGGCAGTCGGCTTCAAGGTCATAGTGCACTTCCGCCCTAT
GCGGAGCCCCCGCCCTGCGTAAGGCGTCAGCCCTGCGCAGAGAGGCAATG
GACAGAGAGGCAATGCGCATACTTGTTCATTCCAAAGGAGGAACAAAGGA
AAATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTC
CACGCTCCGGTAGAACATGTGCAGATTAAAGAGCTTGCTGAGTCAGTCCG
TAAATATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTG
CTGGCATGGCACTAACTCCTGCCGACTGGTAAATGATTGCAAAAGCCGCT
CTCCCTAGTATGGGCAAATATATGGAATTGAGAGCTCTATGGTAAGAGGC
TGCACAAGCGCAGGCCCGAGCAAACGCTGCTGCTTTGACTCCAGAGCAGA
GAGATTGGACTTTTGACTTGTTATCGGGCCAGGAAGCTTATACTTGCTGA
TCAACAAACTACCACTGGGGAGCTTATGCCCAAATTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_i09.b1 MSMg01no059_i09.b1 CHROMAT_FILE:
MSMg01no059_i09.b1 PHD_FILE: MSMg01no059_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:03 2005
         (555 letters)



>mm_chr3_9786504_9787458
          Length = 955

 Score =  841 bits (435), Expect = 0.0
 Identities = 462/471 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccatcaatgccttcagcagttatgagttcagagcagagcagagttatgagagcag 65
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccatcaatggattcagcagttatgagttcagagcagagcagagttatgagagcag 265

                                                                       
Query: 66  aggcggggctcagaggaagtgggctgctggcgatgcctcgaaaggctgtatcttgtcctt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggcggggctcagaggaagtgggctgctggcgatgcctcgaaaggctgtatcttgtcctt 325

                                                                       
Query: 126 acacacttcctccctggctctctgcttcctcactgctaggagggagcagcttgtcccacc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acacacttcctccctggctctctgcttcctcactgctaggagggagcagcttgtcccacc 385

                                                                       
Query: 186 atgcccttcaatccgcctcactaagtgatgatgcttctgaccccactgtgaccccaaaca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgcccttcaatccgcctcactaagtgatgatgcttctgaccccactgtgaccccaaaca 445

                                                                       
Query: 246 cacatctcctgccgtttctatcaggttttgttagagcaacataaaacagacaagttaccc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cacatctcctgccgtttctatcaggttttgttagagcaacataaaacagacaagttaccc 505

                                                                       
Query: 306 ttgtggcacagtggtcatggtgtgacatctaagggggaactagctcacacctggctggag 365
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 506 ttgtggcacagtggtcatggtgtgacatctaaggtggaactagctcacacctggctggag 565

                                                                       
Query: 366 ctgtgcaactgtgggtgcaggctagctcacacctggctggagctgtgtatctgtgagtgc 425
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgtgtatctgtgggtgcaggctagctcacacctggctggagctgtgtatctgtgagtgc 625

                                                              
Query: 426 aggctagctcacacctggctggagctgtgtgtctgcacgtgcagggtggct 476
           |||||||||||||||||||||||||||||  |||| || ||||||||||||
Sbjct: 626 aggctagctcacacctggctggagctgtgcatctgtacatgcagggtggct 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)