BAC Information

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BAC

Clone NameMSMg01-059J03
Chromosome3 (Build37)
Map Location 37,767,679 - 37,957,612
singlet/doubletdoublet
Overlap geneLOC665811
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik
Downstream geneEG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J03.T7 (MSMg01no059_j03.b1)MSMg01-059J03.TJ (MSMg01no059_j03.g1)
ACCAG286217AG286218
length709684
length of high quality
(start - end)
485 (70 - 554)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no059_j03.b1 PHD_FILE: MSMg01no059_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:06 2005CHROMAT_FILE: MSMg01no059_j03.g1 PHD_FILE: MSMg01no059_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,767,679 - 37,768,163)(37,957,343 - 37,957,612)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCAGTGCTGTTCATGCTGTGTGTATCCATGTTATTGGAGACAGGAAG
ATTTGTGCACAGCATCGTTTTGGAAATTTATAGATGCCCAATAAAGAGAG
GGTTGTTATGGAAAAATAGCCTACTTGGCTGTTTTATTCTAGTTATACAC
TTTTAGCTCTGTTGCATCTTGAAGTACCACGTGACTTGGTGCCTGTCATT
TAGTTGTCTGGAGACGTGGAAGCAGAGTGTGGAGAGAACTAAGATGATGT
AGCAGAGAAGTGGCTATGACCATTAACCAGTTACCTATTCATGAGATTCT
TGTCAGAGCTTTTGCCTGGGGATGTTTCTTGGAGTCACTCTGCAGGCAAT
CATGTTTCTTGCACTTTTGCTTCAGCACATTTATTGCATGACAAGGAGGC
TGCTGTGATCATCCCATGCCTGGCAAAAACGTTTCCATGCATCCTGAGGA
AGATGCCCTGACCTGGTTCACTTCAATCTATTTTGGGTGAAAACTTATTT
GGAAGAATATTGGTCTATCGTTTCCTGTCAGCTTGCTTTTACTGGTTGTC
TGTCACAAGGCTGTGTCACTTCTAGCTGCTAAATTATAAGCATGTGTTAG
GGAGCAGAGATTTACTATCGGTCCCCGTCACCATGAGTAATGTCCCAGCA
TGACAAGCG
CAATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGGAAGATCAATTGTATGATGTATA
TATATCTTAATTTCCAAACTCTACAAAAATGAAATGCATAATGTATTGTA
TGACATTGCTCTAAGGTACCATCTTCTGGATGATACACAGAATCTGGATC
CTTATTCAGTATATTGCATCTCTGTGGACCACCATCCTAATTCCTCAGGC
CTTTGTGGATTTTTCTCATCTGGAACTGCCTTTTCTGCTATCACTGTAGG
CTCCAGATTGGATCCTTCTGAATATTCTTTATTCTGACTTAAAGACTCCT
CTAATCTTTTATCTCTAATCTAGCATTTAATATTTTAGTCTTCTCTTTAT
CTAGTCTGATTTATTTTGATCTTTTAAAAATGATATATAAAAATGCTACC
ATAATTGAACGTACCATTATGCTGTAGAGCCTAAACCTATTTAATTATAA
CTCTTTTTGGCCTCTTACCTCTACTCTCCTAACTCATATTTTTTGACTAT
CCCATTTCTTTTCTAAACCCCTCCAAATGACCCTTCTTAAATGGAAACAC
CCTATTCTTCCTTTTATTTGGTTAACACCATCCCATTTTCTTCTTATATT
TCCAATAATCCCTTTTTTCCTATCCTACCCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j03.b1 MSMg01no059_j03.b1 CHROMAT_FILE:
MSMg01no059_j03.b1 PHD_FILE: MSMg01no059_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:06 2005
         (485 letters)



>mm_chr3_37767479_37768363
          Length = 885

 Score =  922 bits (477), Expect = 0.0
 Identities = 483/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtgtatccatgttattggagacaggaagatttgtgcacagcatcgttttggaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtgtatccatgttattggagacaggaagatttgtgcacagcatcgttttggaaattt 260

                                                                       
Query: 61  atagatgcccaataaagagagggttgttatggaaaaatagcctacttggctgttttattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagatgcccaataaagagagggttgttatggaaaaatagcctacttggctgttttattc 320

                                                                       
Query: 121 tagttatacacttttagctctgttgcatcttgaagtaccacgtgacttggtgcctgtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttatacacttttagctctgttgcatcttgaagtaccacgtgacttggtgcctgtcat 380

                                                                       
Query: 181 ttagttgtctggagacgtggaagcagagtgtggagagaactaagatgatgtagcagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagttgtctggagacgtggaagcagagtgtggagagaactaagatgatgtagcagagaa 440

                                                                       
Query: 241 gtggctatgaccattaaccagttacctattcatgagattcttgtcagagcttttgcctgg 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggctatgaccaacaaccagttacctattcatgagattcttgtcagagcttttgcctgg 500

                                                                       
Query: 301 ggatgtttcttggagtcactctgcaggcaatcatgtttcttgcacttttgcttcagcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgtttcttggagtcactctgcaggcaatcatgtttcttgcacttttgcttcagcaca 560

                                                                       
Query: 361 tttattgcatgacaaggaggctgctgtgatcatcccatgcctggcaaaaacgtttccatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttattgcatgacaaggaggctgctgtgatcatcccatgcctggcaaaaacgtttccatg 620

                                                                       
Query: 421 catcctgaggaagatgccctgacctggttcacttcaatctattttgggtgaaaacttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcctgaggaagatgccctgacctggttcacttcaatctattttgggtgaaaacttatt 680

                
Query: 481 tggaa 485
           |||||
Sbjct: 681 tggaa 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no059_j03.g1 MSMg01no059_j03.g1 CHROMAT_FILE:
MSMg01no059_j03.g1 PHD_FILE: MSMg01no059_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:06 2005
         (293 letters)



>mm_chr3_37957120_37957812
          Length = 693

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  tatatatatcttaatttccaaactctacaaaaatgaaatgcataatgtattgtatgacat 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tatatatatcttaatttccaaactctacaaaaatgaaatgcataatgtattgtatgacat 434

                                                                       
Query: 84  tgctctaaggtaccatcttctggatgatacacagaatctggatccttattcagtatattg 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgctctaaggtaccatcttctggatgatacacagaatctggatccttattcagtatattg 374

                                                                       
Query: 144 catctctgtggaccaccatcctaattcctcaggcctttgtggatttttctcatctggaac 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 catctctgtggaccaccatcctaattcctcaggcctttgtggatttttctcatctggaac 314

                                                                       
Query: 204 tgccttttctgctatcactgtaggctccagattggatccttctgaatattctttattctg 263
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 313 tgccttttctgctatcactgtaggctccagattggatccttctgaagattctttattctg 254

                                         
Query: 264 acttaaagactcctctaatcttttatctct 293
           ||||||||||||||||||||||||||||||
Sbjct: 253 acttaaagactcctctaatcttttatctct 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)