BAC Information

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BAC

Clone NameMSMg01-059J04
Chromosome3 (Build37)
Map Location 133,972,703 - 134,092,313
singlet/doubletdoublet
Overlap genePpia-ps3_1390.1
Upstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
Downstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J04.T7 (MSMg01no059_j04.b1)MSMg01-059J04.TJ (MSMg01no059_j04.g1)
ACCAG286219AG286220
length700706
length of high quality
(start - end)
419 (48 - 466)452 (74 - 525)
definitionCHROMAT_FILE: MSMg01no059_j04.b1 PHD_FILE: MSMg01no059_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:06 2005CHROMAT_FILE: MSMg01no059_j04.g1 PHD_FILE: MSMg01no059_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,091,899 - 134,092,313)(133,972,703 - 133,973,154)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATAGGATGCCCTATTGAGAAAGACGGCACAGGTCACTAAGTT
TGCTGGTAGATGGTGTGTATCATGAAAGTAAAAGAGTCGGATATTTGTGT
GCAGCCTGAACTAGAACAATGGAATTCCTAGTCACTGGTAAATGAAAGGG
GAAATGAATGGGGAAAAGAGTGAAGAGTTTGACTCCTGTTTGAAATACTT
TTCCAAATACTGATCCAATAGTCAGTTCTCCAAGACCTGATACTAAGGCA
GGAAATTACTGTTCTTGTGATGTGTGGTCTCCCATCTCCTCTTGAAATGG
CAATGGAACAAAGGATGTATACTTCACAAGTTTGTTGTAAGAACTGGAAA
AACTTAGTAGTCAGCCAGTGAGACAAGTACTTGGAAGCACCTAAGTGTGA
ACTGTTAACTATGGTGAGGGCAGATTATCGAGAGATGGTAATACTCTACA
TTACAAGGACAGACTTTAAAATAGCATAACACTTGCTGTCCCCTCTTCTT
TCACTCCAATGATGGATGTCCATCTATTTACTGGAGGGCAAAAATGGGCA
CTCAAACATAGTTAGGACGTTTTCCTAAACATGTACTTTTGAAAGCATTT
TTCCCTTGGTCTTCGATAGCACTTTACCACTGACTTTCATTCCCTGTTAT

NCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATTTTCATCATTTGAAATTGGGCAA
CTGTTTCTTTATGCCTGCATTTTCAGAGAAAATGTCAGGGTGTGTTCAGG
AAACACCTTTGCCCTCCCCAAATTGTCTTAATACAAACTACCACAAAATA
TTTTAGGCAAATAAAAGTATGATTTCACTTTGAAACAGATAATTCTGGTT
GTGTGTTTATTATCTATTAATTCAATATAAATAAGGGAAATTTGCCATTA
ATTTTCTTATACTGGTAATAATTACAGTTACCATTTTCTGAACAGCAAGT
TCCATGATAAGTTTACTAGAAGCTATTTTATTTAATCTATACATTTTGCG
CTTTATAATTATCCTAATTTAAAATTTGAAGAATGTGTGGCATAAATAGA
TCAGATAATTTGCCCTCATTCATAAAGCCTCTAATTAACGATTTTAGGAT
TCTAAGCAGGTCTGTTTGACTTCAAAGTTCTGCGCATTTCATTATATTGA
TTCTCTAACGGCTAGGGAATTTCCTAAATCTCTCATTTTATGCTCACCAT
TAGAGCGCAAGTCTTTTCACAAGGTAAAACGAAATTTTATCCTTGGATGA
ATGGCGAGCTTTCACCCTACTTTATTTCCTTCGCATATTCCATTTGTTTT
CATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j04.b1 MSMg01no059_j04.b1 CHROMAT_FILE:
MSMg01no059_j04.b1 PHD_FILE: MSMg01no059_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:06 2005
         (419 letters)



>mm_chr3_134091695_134092513
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataggatgccctattgagaaagacggcacaggtcactaagtttgctggtagat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaattccataggatgctctattgagaaagacggcacaggtcactaagtttgctggtagat 560

                                                                       
Query: 65  ggtgtgtatcatgaaagtaaaagagtcggatatttgtgtgcagcctgaactagaacaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggtgtgtatcatgaaagtaaaagagtcggatatttgtgtgcagcctgaactagaacaatg 500

                                                                       
Query: 125 gaattcctagtcactggtaaatgaaaggggaaatgaatggggaaaagagtgaagagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaattcctagtcactggtaaatgaaaggggaaatgaatggggaaaagagtgaagagtttg 440

                                                                       
Query: 185 actcctgtttgaaatacttttccaaatactgatccaatagtcagttctccaagacctgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actcctgtttgaaatacttttccaaatactgatccaatagtcagttctccaagacctgat 380

                                                                       
Query: 245 actaaggcaggaaattactgttcttgtgatgtgtggtctcccatctcctcttgaaatggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 actaaggcaggaaattactgttcttgtgatgtgtggtctcccatctcctcttgaaatggc 320

                                                                       
Query: 305 aatggaacaaaggatgtatacttcacaagtttgttgtaagaactggaaaaacttagtagt 364
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 319 aatggaacaaaggatgtatacttcagaagtttgttgtaagagctggaaaaacttagtagt 260

                                                                  
Query: 365 cagccagtgagacaagtacttggaagcacctaagtgtgaactgttaactatggtg 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagccagtgagacaagtacttggaagcacctaagtgtgaactgttaactatggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no059_j04.g1 MSMg01no059_j04.g1 CHROMAT_FILE:
MSMg01no059_j04.g1 PHD_FILE: MSMg01no059_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:06 2005
         (452 letters)



>mm_chr3_133972503_133973354
          Length = 852

 Score =  874 bits (452), Expect = 0.0
 Identities = 452/452 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattttcatcatttgaaattgggcaactgtttctttatgcctgcattttcagagaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattttcatcatttgaaattgggcaactgtttctttatgcctgcattttcagagaaaat 260

                                                                       
Query: 61  gtcagggtgtgttcaggaaacacctttgccctccccaaattgtcttaatacaaactacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagggtgtgttcaggaaacacctttgccctccccaaattgtcttaatacaaactacca 320

                                                                       
Query: 121 caaaatattttaggcaaataaaagtatgatttcactttgaaacagataattctggttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatattttaggcaaataaaagtatgatttcactttgaaacagataattctggttgtg 380

                                                                       
Query: 181 tgtttattatctattaattcaatataaataagggaaatttgccattaattttcttatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttattatctattaattcaatataaataagggaaatttgccattaattttcttatact 440

                                                                       
Query: 241 ggtaataattacagttaccattttctgaacagcaagttccatgataagtttactagaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaataattacagttaccattttctgaacagcaagttccatgataagtttactagaagc 500

                                                                       
Query: 301 tattttatttaatctatacattttgcgctttataattatcctaatttaaaatttgaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttatttaatctatacattttgcgctttataattatcctaatttaaaatttgaagaa 560

                                                                       
Query: 361 tgtgtggcataaatagatcagataatttgccctcattcataaagcctctaattaacgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtggcataaatagatcagataatttgccctcattcataaagcctctaattaacgatt 620

                                           
Query: 421 ttaggattctaagcaggtctgtttgacttcaa 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 ttaggattctaagcaggtctgtttgacttcaa 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)