BAC Information

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BAC

Clone NameMSMg01-061B09
Chromosome3 (Build37)
Map Location 126,803,850 - 126,804,184
singlet/doubletsinglet
Overlap genenone
Upstream geneArsj, Camk2d, Ank2
Downstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061B09.T7 (MSMg01no061_b09.b1)MSMg01-061B09.TJ (MSMg01no061_b09.g1)
ACCAG287378AG287379
length695799
length of high quality
(start - end)
72 (86 - 157)336 (71 - 406)
definitionCHROMAT_FILE: MSMg01no061_b09.b1 PHD_FILE: MSMg01no061_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:58 2005CHROMAT_FILE: MSMg01no061_b09.g1 PHD_FILE: MSMg01no061_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTTTGAACAGAGGATCCGCGGAATTCTTTCTATTACTGGACGAGGG
TTAGAGTTTAATACTGCCCTCACCACCAGCAAACAGTATACCGCACCTAC
GTTGCCTAGCCCATTGACCCCTCTCCACCAGAATGATTGCCTGTGTCACA
GACGAGCGATTCTGGTAAGATGCGGGTGTGCATCCCCTCCATTCCCGATC
CAGCCCACTGCACCATCCTGTGGTCCCGCTAACACCAGCCTCTGCGAACC
CCGTTATGAAGGCTTCAGTGCCTTCTGCCTTTCCCAGAAGCAATGATCAG
CATTCCACCTGGTTTGGTCCACTGCCTGTCAGAAAGCTTGTGTCTCTTTG
TCCTACAGAGATGCTCAGAACACTTCTGCCCCGGCCTTTCCCCCCTCTGT
TAGGCTATGAATTTCGAGAACATATTTTACTCATGCCCGTACCTCCTGGA
CTCACCCGCATGACTCATTCTAGAATGAACTTCCCCAGACCACAAAACGT
GATGAAAGGCCGACCCAAGAATAGGAAAACACAACCCCCCCACTAATCAC
CTACAACCTCCAAAACAACACGAAATGCGATCCGGCCTCTCAAGGGCAAC
GTCCCACATAAGTTGTTCCCCCATATCACTAACCGAGACACCCCCAACAT
GCTTGAATAGAGTCCGCTTTGCTCCACGCCCCCGGTACTGTTGCN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATTTCTATGTTGACAGTGTATTAATAAAC
GGGAAGTGTGAGTGTTACTTCATTTACATAAATATTAAATAAACACTCCA
TAATTAATGTTAAATATAGCATTAAATAAAATGTAACTAACCTATTTCCA
ATTGAGTTCAGGTCATCTTAAAGTAATTTGTGACACGTCAAAGGCTATTA
ATTTTTTTTTTCGATGCCATTTTAGGAGAGAGTTCTCTCTCAATAGTAAA
TACTCTGTTCATGAGCGATGTTTACTAAACACACCTTCTTGAGCTGGTTT
GAAAAGTTTTTATCTGCCTTGTATGTCTCTTCTAGTAGCCTTTTATTCCC
TGATGTTTCACCTAAACCAAAGGATATTTATTTCTCTGAGACATGGCATA
ATAAGCCATATGCTCAAAGCCAAGTTCTATCACTTTTTGGTACGTTATTT
CAGCTCAAAAAATGTCATTTCTGTAATCTCTATACAGGGTTATAGTATGC
TCAATGCTTCATTTCCCATATGTCAAGACATTTGAAACTATCGAAATAAG
AAACTTTATAAAATTGATTTATCTTACATGTTCCCCACTAGCCTTATTTT
ACCAACTTATTTTAATTATATTTCACACCGTACGAATATAATCTAATTCT
GGTTAATTCGTACTTTTCTCCCCTATAATACTACTTAAACGAATTCCATA
TGTCTCTCCTAAATATCCGTATTCCTACCTCCTGTTAACTTTCATGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_b09.g1 MSMg01no061_b09.g1 CHROMAT_FILE:
MSMg01no061_b09.g1 PHD_FILE: MSMg01no061_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:58 2005
         (336 letters)



>mm_chr3_126803650_126804384
          Length = 735

 Score =  565 bits (292), Expect = e-165
 Identities = 325/336 (96%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttctatgttgacagtgtattaataaacgggaagtgtgagtgttacttcatttacata 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 catttctatgttggcagtgtattaataaacgggaagtgtgagtgttacttcatttacata 476

                                                                       
Query: 61  aatattaaataaacactccataattaatgttaaatatagcattaaataaaatgtaactaa 120
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 475 aatattaaataaacactccataattaatgttaaatatagtattaaataaaatgtaa-taa 417

                                                                       
Query: 121 cctatttccaattgagttcaggtcatcttaaagtaatttgtgacacgtcaaaggctatta 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cctatttccaattgagttccggtcatcttaaagtaatttgtgacacgtcaaaggctatta 357

                                                                       
Query: 181 attttttttttcgatgccattttaggagagagttctctctcaatagtaaatactctgttc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atttcttttttcgatgccattttaggagagagttctctctcaatagtaaatactctgttc 297

                                                                       
Query: 241 atgagcgatgtttactaaacacaccttcttgagctggtttgaaaagtttttatctgcctt 300
           ||||||| ||  |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 296 atgagcggtgggtactaaacacaccttcttgagctggtttgaaaagtttttatctgtctt 237

                                               
Query: 301 gtatgtctcttctagtagccttttattccctgatgt 336
           |  |||||||||||||||||||||||||||||||||
Sbjct: 236 gcgtgtctcttctagtagccttttattccctgatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 735
Length adjustment: 9
Effective length of query: 327
Effective length of database: 726
Effective search space:   237402
Effective search space used:   237402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)