BAC Information

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BAC

Clone NameMSMg01-061D11
Chromosome3 (Build37)
Map Location 56,893,421 - 56,893,658
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040139
Downstream geneLOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061D11.T7 (MSMg01no061_d11.b1)MSMg01-061D11.TJ (MSMg01no061_d11.g1)
ACCAG287477AG287478
length675736
length of high quality
(start - end)
184 (163 - 346)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no061_d11.b1 PHD_FILE: MSMg01no061_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:08 2005CHROMAT_FILE: MSMg01no061_d11.g1 PHD_FILE: MSMg01no061_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTACTATAAAAACAGGATCCGCGGAATTCTTTGTTTAGCTCTGAACCCC
ATTTTTAATGGGGTTATTTGATTTTTCTGGAGTCCACCTTATTGAGTTCC
TTATATATTAGTCACCTATCTGAATTAGGATTGGTAAAGATTCTTTCCCA
ATCTGTTGCTGGCCTTTTTGTCTTATTGACTGTTTCTTTTGCCTTACAGA
AGCTTTACAGTTTTATGAGTTCCCATTTGTTGATTCTCGATCTTACAGCA
CAAGCCATTGCTGTTCTATTCAGGAATTTTTTTTCCTGTGCTTATATCTT
CAAGTCTTTTCCCCACTTTCTCCTCTAAAAGTTTCAATGTCTCTGGTTTT
ATCCGGAGTTCCTTGATCCACTTAAATTTGACCTTAGCACCAGACGATAG
GAATAGATCAATTCGCATTCTTCTACCTGATAACCTCCAGTTGCCGCCCC
ACTATTTGTTTGAAAATGCTGTCTTTTTTCCACTGGATGGCTTTAGCTCC
CTTGCAAAGATCAAGCGATCGTACGCGCGTGGCTCCCTTTCTCCGCCTTC
CATTCTATTCCATTGGCCTATGTGTCTGTTGCTATACCACCACCATGCAG
GCCCCTTTTGCTCTGTCTTTGCATCTCCGTTCCCGCCTCATTCGCTCCCC
TTACTCCCCCCCCCCTTTCTTCCCT
NCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGGTGTCTTCTAGGGACTGGAGA
AAGGCGCTTGAAGGTTGAAGTTCGAAGGATATGACTGCATGTCAGTGTCA
CAGAGTGGGCATACAATCCGACAGTGTGGCCATCCAGTTTGACAGTGTGA
CCATCCAGTATGGCAGTTTCGGTATCCAGTGTGACAGTGTGGACATCCAG
TATGGCAGTGTAGACATCCAGTGTGATAGTATGGTCATCCAATATGATAG
TGTGGGCATCCAGTGTGACTGTTTGTGCATCCAATATGGCAGAGTGGGCA
TTCTGCGTCATAGTATGGACATCGGCGTGACAGTGCGTTCATTCAGTATG
TTTATGTGTGTATCCATTGTGACCATTGGGCTTCCATAGATGTACATGCT
TCCTTTACTCGCCTCTGAACTGCTTTTCTTGTTTGACCTCTTTTGTGATC
TTCCTTCTATATGACAAGCTTAATATAATGAACCTTTCTTTTTCTTTCTT
TTCTTTACATTTTCTTTTCATTATCTTTACTTATTATTTTCATTTCTTTT
ATTTATCACTTCCTTACCCTTACTTATACAATATACATTTCTTTCCACTT
CCTTTTTTTTTTTATTTTTTTTCACCTAATATCCTCTCTTTCTTCCTTCT
ATTTATTCTACAATTCTTCTTACCACATTTACATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_d11.g1 MSMg01no061_d11.g1 CHROMAT_FILE:
MSMg01no061_d11.g1 PHD_FILE: MSMg01no061_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:08 2005
         (243 letters)



>mm_chr3_56893221_56893863
          Length = 643

 Score =  306 bits (158), Expect = 1e-87
 Identities = 218/242 (90%), Gaps = 8/242 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgggtgtcttctagggactggagaaaggcgcttgaaggttgaagttcgaaggatatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctgggtgtcttctagggactggagaaaggcgcttgaaggttgaagttcgaaggatatga 379

                                                                       
Query: 61  ctgcatgtcagtgtcacagagtgggcatacaatccgacagtgtggccatccagtttgaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 ctgcatgtcagtgtcacagagtgggcatacaatccgacagtgtggccatccagtgtgaca 319

                                                                       
Query: 121 gtgtgaccatccagtatggcagtttcggta----tccagtgtgacagtgtggacatccag 176
           ||||| |||||||||||||||||    |||    |||||||||| ||| ||| |||||| 
Sbjct: 318 gtgtggccatccagtatggcagt----gtagacatccagtgtgatagtatggtcatccaa 263

                                                                       
Query: 177 tatggcagtgtagacatccagtgtgatagtatggtcatccaatatgatagtgtgggcatc 236
           ||||  ||||| | |||||||||||| ||| ||| |||||| | ||| ||||||||||||
Sbjct: 262 tatgatagtgtgggcatccagtgtgacagtgtgggcatccagtgtgacagtgtgggcatc 203

             
Query: 237 ca 238
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)