Query= MSMg01no061_e03.b1 MSMg01no061_e03.b1 CHROMAT_FILE:
MSMg01no061_e03.b1 PHD_FILE: MSMg01no061_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:11 2005
(654 letters)
>mm_chr3_57261522_57262573
Length = 1052
Score = 1191 bits (616), Expect = 0.0
Identities = 645/656 (98%), Gaps = 4/656 (0%)
Strand = Plus / Plus
Query: 1 acagctcatgtcctgacgagggcctttctgtatgtgttaatcagagatcggcttcattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctcatgtcctgacgagggcctttctgtatgtgttaatcagagatcggcttcattct 260
Query: 61 tcaaccagtttcatagacaggattattttaaacacttgaaatcttgaaagcagaattaat 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaacagtttcatagacaggattattttaaacacttgaaatcttgaaagcagaattaat 320
Query: 121 aatgcctcagaatacaaaacgcagcacacaaaattcatggttcatcaggctgcgacctag 180
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgcctcagaatacaaaa--cagcacacaaaattcatggttcatcaggctgcgacctag 378
Query: 181 ttggcctgatgttttcagaatcaggtccaaaagacgaaaatatagttgccactgatttat 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 379 ttggcctgatgttttcagaatcaggtccaaaagataaaaatatagttgccactgatttat 438
Query: 241 caaaaacatttggctaccctctgtaatagctacaaaattacagagtttatatatatatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaaaacatttggctaccctctgtaatagctacaaaattacagagtttatatatatatat 498
Query: 301 atatatatatatatatatatatatatatataaaacaaacatcaaattctaacctgcattt 360
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 499 atatatatatatatatatatatatatatatataacaaacatcaaattctaagctgcattt 558
Query: 361 tgaaaaaaaaatcaagctgcaattaaaaaaaa--aaaacaattttgttctgtaatcattc 418
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tgaaaaaaaaaccaagctgcaattaaaaaaaaacaaaacaattttgttctgtaatcattc 618
Query: 419 atattgggaccaaactggtctctttcacacgatctgtcatgcaagaattgtgacagatgt 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atattgtgaccaaactggtctctttcacacgatctgtcatgcaagaattgtgacagatgt 678
Query: 479 tgaagttactctcctgctcacagaatggagctgctaagcaggaaaatgatgaacggtggc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgaagttactctcctgctcacagaatggagctgctaagcaggaaaatgatgaacggtggc 738
Query: 539 aacattggtactctgtgcccttgtaaacacagaatgagagaagccatcagagccagcatg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacattggtactctgtgcccttgtaaacacagaatgagagaagccatcagagccagcatg 798
Query: 599 gattccaaactacactgtattccctacaggagaaaattactatctatacaatgatt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gattccaaactacactgtattccctacaggagaaaattactatctatacaatgatt 854
Score = 89.7 bits (46), Expect = 7e-22
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 287 ttatatatatatatatatatatatatatatatatatatatatata-aaac 335
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 532 ttatatatatatatatatatatatatatatatatatatatatatataaac 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 7
Length of query: 654
Length of database: 1052
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1042
Effective search space: 671048
Effective search space used: 671048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_e03.g1 MSMg01no061_e03.g1 CHROMAT_FILE:
MSMg01no061_e03.g1 PHD_FILE: MSMg01no061_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:11 2005
(618 letters)
>mm_chr3_57391793_57392810
Length = 1018
Score = 940 bits (486), Expect = 0.0
Identities = 510/518 (98%)
Strand = Plus / Minus
Query: 1 catccaagtgtggtgacacactcctgcaatcccattactctgcatgcaggtgggagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 catccaagtgtggtgacacactcctgcaatcccattactctgcatgcaggtgggagcagc 459
Query: 61 gggacacacaggaaagatagattttgtataagaatcttgtgaaaacattagggcccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gggacacacaggaaagatagattttgtataagaatcttgtgaaaacattagggcccagaa 399
Query: 121 gtttgcctcagcctgtaaaagcacttagcatgaaggactgacaacctgaatctgacccct 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtttgcctcagtctgtaaaagcacttagcatgaaggactgacaacctgaatctgacccct 339
Query: 181 gaattccacagcagtaggaagaaaacagacaacttaaaggtgtcctctaattccatatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaattccacagcagtaggaagaaaacagacaacttaaaggtgtcctctaattccatatga 279
Query: 241 gtacaatggcacttagacaccatacctccaccaacacacatggggaaataataatagtat 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtacaatggcactcagacaccatacctccaccaacacacatggggaaataataatagtag 219
Query: 301 tattattcttgttatttgtttgtttgtttgagacagggtgtcttgcctttcctggaactc 360
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 218 tattattattgttatttgtttgtttgtttgagacagggtgtcttggctttcctggaactc 159
Query: 361 aactgtgtagaccaggctgctctctaacgtacagagatctgcttacctttacttctcaaa 420
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 158 aactgtgtagaccaggctgctctctgacttacagagatctgcttacctttacttctcaaa 99
Query: 421 tgctaggattaaagaggtgtaccaccatgcctggcaataataataattttaaaattgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 tgctaggattaaagaggtgtaccaccatgcctggcaataataataattttaaaattgaaa 39
Query: 481 accaactagagggctggcaagatggctcagcgggtaag 518
|||||||||||| |||||||||||||||||||||||||
Sbjct: 38 accaactagaggactggcaagatggctcagcgggtaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
