BAC Information

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BAC

Clone NameMSMg01-061F14
Chromosome3 (Build37)
Map Location 72,590,285 - 72,590,477
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061F14.T7 (MSMg01no061_f14.b1)MSMg01-061F14.TJ (MSMg01no061_f14.g1)
ACCAG287579AG287580
length831731
length of high quality
(start - end)
201 (43 - 243)596 (69 - 664)
definitionCHROMAT_FILE: MSMg01no061_f14.b1 PHD_FILE: MSMg01no061_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:18 2005CHROMAT_FILE: MSMg01no061_f14.g1 PHD_FILE: MSMg01no061_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAAATCCGCGGAATTC
ATTTGCTTTTGCAAGGAATCAGAATTTAACCAAAGATGTCATTTTAGGTA
GAGAAAGGATATAGAAAGTTAGTGGGAAAGGAAAGAATATGATAAAAATA
TACTATCTCCTGGGCAGAGACACTCTCTCAAAAACATATATATATATATA
TATGTGAGTGTGTGTGTGTGTTTGTGTGTGCGCACATATATATACACTTT
TGTATACCCATATGTTCATATTTATATATTACTATATATACTATCTGAAC
ATTCTAAACAAAATATTTTTTTTTAAAAATAAAGTAACTTCCTGCTAACG
GAAATTTGCTTATTACATGTCTCAACCTTCTTTTCAATATATATTTTTTG
GTGAGATTCTGATTATTCAAAACCACCTTGTTATCCTTTGCAGATACATG
ATTGGATTGTATAATTTATATTAACAAATTTTATGTATCCTATGAATACT
TGTCTTATATTTCATTTACGGTCTTTTAATCGTAATCATTTTTTATTAAT
GCTAAATAATCTCCAATACGCCCTTTATGAACATTTAATTATATATCAAT
TATACAAGAATCATAATAAGTTTTATTTTTTATTGTATACTATTTTTGCA
TTATATTATTAATTAATCGTGTATTTGTAATTTGAATCTTTTAAACACTA
CTTATTTACAACTATCTTACACCTTTTACTTATAATATATATATCAATTT
CTCCTCGCATCTATATTTCATATCTACATTTATTTACTTTCTTCACCTCT
TATATTTTTATTTCCTTATATATTTTATATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAAGCCTGATAAACAGCTTCAGTGAAGTAGC
TGGATATAAAATTAACTCTAACAAGTCAATGGCCTTTCTCTACACAAAGG
ATAAACAGGCTGAGAAAGAAATTAGGGAATTAACACCCTTCTCAATAGTC
ACAAATAATATAAAATACCTTGGTGTGACTCTAACTAAGGAAGTGAAAGA
TTTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATC
TCAGAAGATGGAAAGTTCTCCCATGCTCGTGGATTGTCAGGATTAATATC
GTAAAAATGGCTATCTGGCCAAAAGCAATCTACAGATTCAATACAATCCC
CATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAAGGGAAATCTCCA
AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAG
GATAAAAGATCCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTA
CAGAGCAATTCTGATAAAAACTGCATGGTACTGGTATAGCTACAGACAAG
TAGACCAATGGAATAAAATTGAAGACCCAGAAATGAACCTACACATCTAT
GGTCACTTGATCTTTAACAAGGGAGCTAAAAACATGCAGTGGAATAAAGA
CAGCATTTTCAACAAATGGTGCTGGCACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_f14.b1 MSMg01no061_f14.b1 CHROMAT_FILE:
MSMg01no061_f14.b1 PHD_FILE: MSMg01no061_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:18 2005
         (201 letters)



>mm_chr3_72590121_72590721
          Length = 601

 Score =  308 bits (159), Expect = 2e-88
 Identities = 187/199 (93%), Gaps = 6/199 (3%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcatttgcttttgcaaggaatcagaatttaaccaaagatgtcattttaggtagaga 62
           ||||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 357 gaattcatttgcttaaggaaggaattagaatttaaccaaagatgtcattttaggtagaga 298

                                                                       
Query: 63  aaggatatagaaagttagtgggaaaggaaagaatatgataaaaatatactatctcctggg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaggatatagaaagttagtgggaaaggaaagaatatgataaaaatatactatctcctggg 238

                                                                       
Query: 123 cagagacactctctcaaaaacatatatatatatatatatgtgagtgtgtgtgtgtgtttg 182
           |||||||||||||||||||||    ||||||||||||||||||  |||||||||||||||
Sbjct: 237 cagagacactctctcaaaaac----atatatatatatatgtga--gtgtgtgtgtgtttg 184

                              
Query: 183 tgtgtgcgcacatatatat 201
           |||||| ||| ||||||||
Sbjct: 183 tgtgtgtgcatatatatat 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)