CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAGATGCGCGGAA
TTCAGAGTATTCACATGCATGCTTTATAAATTATATATTGATGAGTTCTT
CCAATATGGATGCTGACATAATTCCTCTCAGTTTTCAGGGAAAGCACTGA
ATTGTTGATATGAAGAAAGAACTTTGAAACCACATCTACAACCGCCTTTT
GGCACTAGCATAAAGTCTTTCTGAATCAAAAATTAAACATGTTCAACACA
GAGGCTATCCCTTTTCATTTTCTGCTTTTACTTATTTATGCAATATCACT
TTATCTTGGTTCCATAATGTATTTTTTCTTTCAAATAGGCTCACAGTCTT
TTCTTTTTCCCACAGCATTCCATTTTGTAACAGTACTCATTTGCCATTTC
AATTTAACTCCATAATAAATTTCTATTCATTCCTATTCTTCTATTTAATT
GAAAAAAATATTAGTACAATAAATTCTGATTGTGGCTACTGCTCCCAAAA
CTTCTCCCAGACCTTCCCCAATTCCCTTACCATCCACCATTTCTTGTTCT
AACTTCTTAGAATTTATACAGACATCTAAATTAATAATAATAATAATAAT
ATATTAAATTAATTATGATAAAAACAAACAGACCTAAATTAGACAAATAA
ACTAACAGAAAAAATAGAATTTCAGATAAAGATCATAAAACACATATAGA
ACTGGAGATACATCTTTTCTTATACAGAAATCCTATATAAATACTAA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTATGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAAGTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACAT
GATACTCAAGAAGAATGAAGACTGCAATGTGGAN

Query= MSMg01no061_h18.b1 MSMg01no061_h18.b1 CHROMAT_FILE:
MSMg01no061_h18.b1 PHD_FILE: MSMg01no061_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:28 2005
         (571 letters)



>mm_chr3_5763476_5764445
          Length = 970

 Score = 1058 bits (547), Expect = 0.0
 Identities = 565/571 (98%), Gaps = 2/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctttataaattatatattgatgagttcttccaatatggatgctgacataattcctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgctttataaattatatattgatgagttcttccaatatggatgctgacataattcctctc 514

                                                                       
Query: 61  agttttcagggaaagcactgaattgttgatatgaagaaagaactttgaaaccacatctac 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aattttcagggaaagcactgaattgttgatatgaagaaagaactttgaaaccacatctac 454

                                                                       
Query: 121 aaccgccttttggcactagcataaagtctttctgaatcaaaaattaaacatgttcaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaccgccttttggcactagcataaagtctttctgaatcaaaaattaaacatgttcaacac 394

                                                                       
Query: 181 agaggctatcccttttcattttctgcttttacttatttatgcaatatcactttatcttgg 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agaggctatccc-tttcattttctgcttttacttatttatgcaatatcactttatcttgg 335

                                                                       
Query: 241 ttccataatgtattttttctttcaaataggctcacagtcttttctttttcccacagcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttccataatgtattttttctttcaaataggctcacagtcttttctttttcccacagcatt 275

                                                                       
Query: 301 ccattttgtaacagtactcatttgccatttcaatttaactccataataaatttctattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccattttgtaacagtactcatttgccatttcaatttaactccataataaatttctattca 215

                                                                       
Query: 361 ttcctattcttctatttaattgaaaaaaatattagtacaataaattctgattgtggctac 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttcctattcttctatttaattg-aaaaaatattagtacaataaattctgattgtggctac 156

                                                                       
Query: 421 tgctcccaaaacttctcccagaccttccccaattcccttaccatccaccatttcttgttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tgctcccaaaacttctcccagaccttccccaattcccttaccatccaccatttcttgttc 96

                                                                       
Query: 481 taacttcttagaatttatacagacatctaaattaataataataataataatatattaaat 540
           || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 95  taccttcttagaatatatacagacatctaaattaataataataataataatagattaaat 36

                                          
Query: 541 taattatgataaaaacaaacagacctaaatt 571
           |||||||||||||||||||||||||||||||
Sbjct: 35  taattatgataaaaacaaacagacctaaatt 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)