Query= MSMg01no061_o14.b1 MSMg01no061_o14.b1 CHROMAT_FILE:
MSMg01no061_o14.b1 PHD_FILE: MSMg01no061_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:01 2005
(579 letters)
>mm_chr3_84170629_84171601
Length = 973
Score = 934 bits (483), Expect = 0.0
Identities = 544/577 (94%), Gaps = 24/577 (4%)
Strand = Plus / Plus
Query: 5 gaattcaacctga---tcccctgagtagcttttacttgaggctgcttgtgaagttttaag 61
||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacctgaaagtc---tgagtagcttttacttgaggctgcttgtgaagttttaag 261
Query: 62 cagcacagaccttgaaggtggggaggctaagcagcaagcagcaggtgagaggcaggacgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagcacagaccttgaaggtggggaggctaagcagcaagcagcaggtgagaggcaggacgg 321
Query: 122 gagccaagtcacttagggtctctctgcctctgagaccgatgtgggagaccagggctgaag 181
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 322 gagccaagtcacttagggtctctctg------agaccgatgtgggagaccagggctgaag 375
Query: 182 aggaagggcctgtgtgaagtccctggtgttcactgggtctcacagagggttagactttga 241
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 376 aggaaggacctgtgtgaagtccctggtgttcactggctctcacagagggttagactttga 435
Query: 242 agttatgacaaatcagaaatggtcaagacttttcaaagactacaacttgaaacagctaga 301
||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 436 agttatgacaaat-------ggtcaagacttttcaaagactacaacc-----cagctaga 483
Query: 302 aacagatcaatcctgaataagattattcgaccttctattagttccctacaggaagaaagg 361
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 484 aacagatcaatcctgaataagattattcgagcttctattagttccctacaggaagaaagg 543
Query: 362 gttgactttaccaccctagaagggtagacgccatcatggcagggaaaaggaagatgagga 421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gttgactttaccatcctagaagggtagacgccatcatggcagggaaaaggaagatgagga 603
Query: 422 caggagcaggacgttgacaggaagcagagaaaaagaacaggaagtggggccaggctatga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 caggagcaggacgttgacaggaagcagagaaaaagaacaggaagtggggccaggctatga 663
Query: 482 acttcaaagcctgtcccttcgtaacatgctttttacagcaagactccaccacctaaaggt 541
||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct: 664 acttcaaagcctgtcccttagtaatatgctttttacagcaagactccacctcctaaaggt 723
Query: 542 ttcctaaacagcaccaccatctggggaccaagtgttc 578
|||||||||||||||||||||||||| ||||||||||
Sbjct: 724 ttcctaaacagcaccaccatctggggcccaagtgttc 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 973
Length adjustment: 10
Effective length of query: 569
Effective length of database: 963
Effective search space: 547947
Effective search space used: 547947
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_o14.g1 MSMg01no061_o14.g1 CHROMAT_FILE:
MSMg01no061_o14.g1 PHD_FILE: MSMg01no061_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:01 2005
(578 letters)
>mm_chr3_84314327_84315304
Length = 978
Score = 1079 bits (558), Expect = 0.0
Identities = 570/574 (99%)
Strand = Plus / Minus
Query: 5 acatccagggctatatagagacagtctcaaaaaccccaaaataagtaacagacaaactag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acatccagggctatatagagacagtctcaaaaaccccaaaataagtaacagacaaactag 719
Query: 65 ggttgaatgtgagggtctgacatattacttttcaagttaaggtatacaatatagtttatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggttgaatgtgagggtctgacatattacttttcaagttaaggtatacaatatagtttatt 659
Query: 125 gcttaacatagtcttcattcttgggactagaagatatgaatctccctgttgatatctgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcttaacatagtcttcattcttgggactagaagatatgaatctccctgttgatatctgaa 599
Query: 185 taaagacctttggctgtagcacatggactgttttttagtaaattagaggtcacttccttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 598 taaagacctttggctgtagcacatggactgttttttagtaaattagaggtcacttgcttt 539
Query: 245 cttttagttgagtacagaatacttgaggcagctctgtcattgctttccatagcagtactg 304
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 538 cttttagttgagtacagaatacttgaggcagctgggtcattgctttccatagcagtactg 479
Query: 305 ttaacttccacagggctatgacagaggtgctgtgtacctgctgggagatcacggagtgag 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 ttaacttccacagggctatgacagaggtgctgtgtagctgctgggagatcacggagtgag 419
Query: 365 gttgatagagtaacaattttagaatcattaaggcaaagcatctcacagaaccaggccata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gttgatagagtaacaattttagaatcattaaggcaaagcatctcacagaaccaggccata 359
Query: 425 gtgtctataggagatgtcattttcacgttatagatgctgctgtaaccacaatccatcagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtgtctataggagatgtcattttcacgttatagatgctgctgtaaccacaatccatcagc 299
Query: 485 attgtactatcatatgtgcctgtcaaacacaaaaatgtgaccagtatctgttggaatatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 attgtactatcatatgtgcctgtcaaacacaaaaatgtgaccagtatctgttggaatatg 239
Query: 545 atgatctagaaaatatacaggggctttccaagag 578
||||||||||||||||||||||||||||||||||
Sbjct: 238 atgatctagaaaatatacaggggctttccaagag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
