BAC Information

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BAC

Clone NameMSMg01-061P05
Chromosome3 (Build37)
Map Location 30,249,414 - 30,249,699
singlet/doubletsinglet
Overlap geneMds1
Upstream gene6130401L20Rik, LOC100040676, Evi1
Downstream geneLOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P05.T7 (MSMg01no061_p05.b1)MSMg01-061P05.TJ (MSMg01no061_p05.g1)
ACCAG288040AG288041
length818756
length of high quality
(start - end)
183 (133 - 315)293 (69 - 361)
definitionCHROMAT_FILE: MSMg01no061_p05.b1 PHD_FILE: MSMg01no061_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005CHROMAT_FILE: MSMg01no061_p05.g1 PHD_FILE: MSMg01no061_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCCCTTTCCCCTCCCCTNCAACTATCATTCTTACGGGNCTCTATTTT
CTCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGAG
GATCCGCGGAATTCATTGTATCATGCACATCTTTGTGTAGCTAAGCTGGC
AGACACTCTATTCTTGTTTAAAAGTGAAATTTATACCAATAGATGTGGTG
GTTTGAATAAGAGTTGCCCCTCATTGGCCCAACTATTTGAATTCTTGGCC
CCTAACTGGTGGAACTATTTGCGGAGGATTGGAAGGTATGGCCTTGTTAG
AGGAGGTGTGTCACTGGAGTTAAGCTTTGGGCTCCAAAAGCTCATGGCAT
TCCCAATTAGTGCCCCACCCCTGCTTTGTGGTTGCTGTCTCACAATGTAA
GCTCCCAGCTATTGTTCCAGCACCCTGGCTGCCTGCCTTGCTCTCCATCA
TGCTGGCTCCACCCTTACCCTCCCCCCCTGTACGTACTCCCCCAATTAAC
CATTTTCTGCTATACCTTGTCTCGGTCATGTTGCCCCCTCCCACCCCTTT
TACACCACACGCACCCAGCCCCCTCCCACCATTTTTCTTTCCACCCCCTT
TTGTTTTACACCACACCCCCCCCCTTCTCTACCGCTGACCTTTGCGTACC
CACCGATTTGCCTCCCAAATCCTCTTCCCTCCCTCCACACTGGCCACCCA
CTCCGCCCCCCCCCTTTTTTCTCCACTCTCCATTATTATATCCCCCTATG
CCTGCACCTTTTTANAACTCACCCCCCCTTTTGTTTTTCCTCTCCCTCCC
CTCTGCTCATCACCCCCN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCTTAGAGATAAGTTTAGCCCTTCAACAACA
AGGCAATGTCTTCTCTGTTGCTTAGGCTACAAGACGCTTACCTCCGAGTA
GCCTGGATAAGATTTTAAATGCCTCTGTCATAGTGGTTGGCCACTATGAC
AGGAACTGTTGGCCAGGTCCCTTCCCTACCCATCTGTTAGGTTAGTGTTA
TTCTTCCGGCACAAAGTGGCTCAGACATGGACTCTACATAGGAAGATCGA
TCTCCTCAGAAATACTATATTCTCAAATGATCAATGTTCCTAAAATACAG
CTTACAAACACATGTAGGACAATGGTAGGTTTAATTGGGGAAACAAAAAC
TTAATCCATTGCCAAATTATTTAGTTAGCCCTTATCTTCTCTTTGAACAT
AATGTCCGAGTCCAAAAGATGGAGGTTGGTGCCTTGAACGTGCCTGTGCA
GCTACTTATAAGCATATAGCTCTCCCTCCTCCTATGGAATTCATCTTTGT
GCATTATATTAACTTTTCTCTTGTGATAGGAGCGCTTTCCCGGTACTATA
TGTTACCATAGCGTTAGAGTATATTTCTGTGGGGTTTTCTTTTATTCTTT
AACCTGCATTTCTGCCCCTACCACTAGTAGCTAAGTGGTTGTCATCAATC
TTCACCTACATGTTTCACCCGGTTCTTTTCCCAAGTGCTTACTGAAGTAG
AAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p05.g1 MSMg01no061_p05.g1 CHROMAT_FILE:
MSMg01no061_p05.g1 PHD_FILE: MSMg01no061_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:04 2005
         (293 letters)



>mm_chr3_30249214_30249906
          Length = 693

 Score =  509 bits (263), Expect = e-148
 Identities = 283/293 (96%), Gaps = 7/293 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttagagataagtttagcccttcaacaacaaggcaatgtcttctctgttgcttaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agcttagagataagtttagcccttcaacaacaaggcaatgtcttctctgttgcttgggct 260

                                                                       
Query: 61  acaagacgcttacctccgagtagcctggataagattttaaatgcctctgtcatagtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagacgcttacctccgagtagcctggataagattttaaatgcctctgtcatagtggtt 320

                                                                       
Query: 121 ggccactatgacaggaactgttggccaggtcccttccctacccatctgttaggttagtgt 180
           |     ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 g-----ta--acaggaactgttggccaggtcccttccctacccatctgttaggttagtgt 373

                                                                       
Query: 181 tattcttccggcacaaagtggctcagacatggactctacataggaagatcgatctcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tattcttccggcacaaagtggctcagacatggactctacataggaagatcgatctcctca 433

                                                                
Query: 241 gaaatactatattctcaaatgatcaatgttcctaaaatacagcttacaaacac 293
           ||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 434 gaaatactaaattctcaaatgaacaatgttcctaaaatacagcttacaaacac 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)