BAC Information

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BAC

Clone NameMSMg01-061P21
Chromosome3 (Build37)
Map Location 38,094,923 - 38,272,181
singlet/doubletdoublet
Overlap geneLOC100040785
Upstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366
Downstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P21.T7 (MSMg01no061_p21.b1)MSMg01-061P21.TJ (MSMg01no061_p21.g1)
ACCAG288071AG288072
length736731
length of high quality
(start - end)
285 (74 - 358)558 (77 - 634)
definitionCHROMAT_FILE: MSMg01no061_p21.b1 PHD_FILE: MSMg01no061_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:07 2005CHROMAT_FILE: MSMg01no061_p21.g1 PHD_FILE: MSMg01no061_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,271,898 - 38,272,181)(38,094,923 - 38,095,480)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACACGATCCGCGGA
ATTCAATATTTTGCCACAGAAAAAGAATGCTGGACTGTGCCTTACCAAGC
ATTATCCTAGAGGCTGTGGAAACTTCAGCTGAGTGACCCTGAACGATATC
CTTTTACAACTCAAGCTTTATTGACAAATGGTGTTGGCTAGAGCAGTGCC
AAGCACAATCAGTGATTTTTAAATAAAGTTTTATTTGAAACAAAGAAGAT
CCAGTTGTTTGGTTATTGTCTCTGATAATTTTGTATCACAGTAGCCAATG
CCACTCAGAGACTGGTTCGAAGAGAATATGCTTGCTGACTCTTGATCTAG
GAGTTCACGGAAGAGTGAAGTCAGGTGGAGTTTAAGGGAATCTGGCATTT
GTGTAGTAAGCCTACCCCACGCAGGCAGCTAGTCTGAGGTGGGGAGAAAT
GGCTGTGGCCCTGCATCCTGAACATTCCTAGGAGAACACACTCCTCCCAT
TACCTTTATTAACCCAAAGGCCACCGCACGAATCTTAAACATACACCTTT
CCTCATTTTGCCATACTACCCCCTCCTTTATCGATACCTCTGTGTGCTCG
CTTACTCTTCCGCTTCCACCTCCCTTTCTGCATAACCACGGGCCTCACAC
ACCCGTTTGCAACGACCTATTAAACCGCCCACCACCCCCACACCGCAAAC
CTCAATTAACTCCACCCCCTCCTTACCCCTCCCCCG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCTCACAACAATATTTCCTA
GCATAGCTTCTAAACACACTAAATCGTTTCAAACTTTTTATGACAAAGTA
AATTGGCTGGTAATAATATTAAAAGTCAAAAAACATAGTTTTGCTTAGAA
TAAGAATGTCTGGTTGGGCCAGAAGATCTCAGTAGTTGTCAGCCTTGAAT
GTGCACAATCAATGGGATATGTCTTCAGGGGAGGTGAAGATTTGTTTCTG
CCTCATTTTCCTTAAACTATTTAATTACCAGAAATTTCTGCAATCCTAAA
TCACTGCTGTAAGAAAGCTACTTAATACCTAGTCCCTATACACTTAGTTG
CAAGTAAGAATCTACTTTTCCAACGCAAAGACAAGGCTATGTCTACAGTT
GAGGGGTTATGTTTCCATTTATAATATAGATGAATTTGGCAAGAGTAGAG
TTAGGAAAGGCATGGTCCCAGAAGTGGCCAAGGAAGATGATTTAGGCCTA
GAATCCTAGCAGACAGAAGATGTGAGTAACTCTATATGAATCCAGATGTC
TTGTTATACTATTTTAAACTCCTCCTCTGTCCATTATTATTGAGCACATT
AGGTCAGGTTCTAGAAATATTAGATAACAATCATTGTCAGAATGTAAAGA
TGTGTGTGTAGTCCTTAGAATTTTACATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p21.b1 MSMg01no061_p21.b1 CHROMAT_FILE:
MSMg01no061_p21.b1 PHD_FILE: MSMg01no061_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:07 2005
         (285 letters)



>mm_chr3_38271698_38272382
          Length = 685

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgctggactgtgccttaccaagcattatcctagaggctgtggaaacttcagctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agaatgctggactgtgccttaccaagcattatcctagaggctgtggaaacttcagctgag 425

                                                                       
Query: 61  tgaccctgaacgatatccttttacaactcaagctttattgacaaatggtgttggctagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgaccctgaacgatatccttttacaactcaagctttattgacaaatggtgttggctagag 365

                                                                       
Query: 121 cagtgccaagcacaatcagtgatttttaaataaagttttatttgaaacaaagaagatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagtgccaagcacaatcagtgatttttaaataaagttttatttgaaacaaagaagatcca 305

                                                                       
Query: 181 gttgtttggttattgtctctgataattttgtatcacagtagccaatgccactcagagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttgtttggttattgtctctgataattttgtatcacagtagccaatgccactcagagact 245

                                                       
Query: 241 ggttcgaagagaatatgcttgctgactcttgatctaggagttca 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggttcgaagagaatatgcttgctgactcttgatctaggagttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no061_p21.g1 MSMg01no061_p21.g1 CHROMAT_FILE:
MSMg01no061_p21.g1 PHD_FILE: MSMg01no061_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:07 2005
         (558 letters)



>mm_chr3_38094723_38095680
          Length = 958

 Score = 1056 bits (546), Expect = 0.0
 Identities = 555/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcctcacaacaatatttcctagcatagcttctaaacacactaaatcgtttcaaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcctcacaacaatatttcctagcatagcttctaaacacactaaatcgtttcaaactt 260

                                                                       
Query: 61  tttatgacaaagtaaattggctggtaataatattaaaagtcaaaaaacatagttttgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgacaaagtaaattggctggtaataatattaaaagtcaaaaaacatagttttgctt 320

                                                                       
Query: 121 agaataagaatgtctggttgggccagaagatctcagtagttgtcagccttgaatgtgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaataagaatgtctggttgggccagaagatctcagtagttgtcagccttgaatgtgcac 380

                                                                       
Query: 181 aatcaatgggatatgtcttcaggggaggtgaagatttgtttctgcctcattttccttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcaatgggatatgtcttcaggggaggtgaagatttgtttctgcctcattttccttaaa 440

                                                                       
Query: 241 ctatttaattaccagaaatttctgcaatcctaaatcactgctgtaagaaagctacttaat 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatttaagtaccagaaatttctgcaatcctaaatcactgctgtaagaaagctacttaat 500

                                                                       
Query: 301 acctagtccctatacacttagttgcaagtaagaatctacttttccaacgcaaagacaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 acctagtccctatacacttagttgcaagtaagaatctacttttccaatggaaagacaagg 560

                                                                       
Query: 361 ctatgtctacagttgaggggttatgtttccatttataatatagatgaatttggcaagagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatgtctacagttgaggggttatgtttccatttataatatagatgaatttggcaagagt 620

                                                                       
Query: 421 agagttaggaaaggcatggtcccagaagtggccaaggaagatgatttaggcctagaatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagttaggaaaggcatggtcccagaagtggccaaggaagatgatttaggcctagaatcc 680

                                                                       
Query: 481 tagcagacagaagatgtgagtaactctatatgaatccagatgtcttgttatactatttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcagacagaagatgtgagtaactctatatgaatccagatgtcttgttatactatttta 740

                             
Query: 541 aactcctcctctgtccat 558
           ||||||||||||||||||
Sbjct: 741 aactcctcctctgtccat 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)