Query= MSMg01no062_d15.b1 MSMg01no062_d15.b1 CHROMAT_FILE:
MSMg01no062_d15.b1 PHD_FILE: MSMg01no062_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:36 2005
(718 letters)
>mm_chr3_119048868_119049985
Length = 1118
Score = 1342 bits (694), Expect = 0.0
Identities = 712/718 (99%)
Strand = Plus / Plus
Query: 1 gttgctcacttttaagctaataaagagaaaaccctacaatcaaaggcagtgaagggtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgctcacttttaagctaataaagagaaaaccctacaatcaaaggcagtgaagggtata 260
Query: 61 attggtgcaatgctgtttgctatcagtgtacttcccagggtcatttttgttaactgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggtgcaatgctgtttgctatcagtgtacttcccagggtcatttttgttaactgaaga 320
Query: 121 atgaagtaaaacatttttaagtgctcagccctccaataagaatatatatggttaccctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaagtaaaacatttttaagtgctcagccctccaataagaatatatatggttaccctga 380
Query: 181 gcagtcaagtccaaatacatgattattacagaagcacctgtttcactgggctccttgtaa 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gcagtcaagtccaaatacatgattattacagaagcacctgttccactgggctccttgtaa 440
Query: 241 aggatctcattttttcagttgcagaaatacatcatgtgtagtcaacccatgtctagaaat 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 aggatctcattttttcagttgcagaaatacatcatgtggagtcaacccatgtctagaaat 500
Query: 301 atatcacttttagctccatctaccattaaggatgaataaaaatgtcagaaacataagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatcacttttagctccatctaccattaaggatgaataaaaatgtcagaaacataagaga 560
Query: 361 gcttatacacatattgcaggtatggtagtgcctgtgtaacttgaaaatatatccatcaag 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gcttatacacatattgcaggtatggtagtgcctgtgcaacttgaaaatatatccatcaag 620
Query: 421 aagtatgggcagttttcatggtacataaaattcttcagaagtcacactccattctgcacc 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtatgggcagttttcatggaacataaaattcttcagaagtcacactccattctgcacc 680
Query: 481 atgccatatgcctttcctgagcaaggagatatttgaagtctccttttattctgtctccta 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcaatatgcctttcctgagcaaggagatatttgaagtctccttttattctgtctccta 740
Query: 541 tgtttgagctagagccttatgaccacagcttccttgccccatcaccatagaaatgaaaag 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 tgtttgagctagagccttatgaccacagcttccttgtcccatcaccatagaaatgaaaag 800
Query: 601 gactttcttgtggatagacaacggacttaataatatgaaataacagagagggataaccgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gactttcttgtggatagacaacggacttaataatatgaaataacagagagggataaccgg 860
Query: 661 gcacccatgttcctcatggtagtgtagtaataaaatctatgttatttgaggaatgaaa 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gcacccatgttcctcatggtagtgtagtaataaaatctatgttatttgaggaatgaaa 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space: 784464
Effective search space used: 784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_d15.g1 MSMg01no062_d15.g1 CHROMAT_FILE:
MSMg01no062_d15.g1 PHD_FILE: MSMg01no062_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:36 2005
(632 letters)
>mm_chr3_119176907_119177938
Length = 1032
Score = 791 bits (409), Expect = 0.0
Identities = 436/445 (97%), Gaps = 1/445 (0%)
Strand = Plus / Minus
Query: 188 tcttgtgcctgtgctatcagcatgttgctcaaaaaattgcttcgtgtgccagtgagttca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tcttgtgcctgtgctatcagcatgttgctcaaaaaattgcttcgtgtgccagtgagttca 973
Query: 248 agaatatccccattgtctcttatatcatattcactgtatctgggctcatgtttaggtcct 307
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 972 agaatatccccattgtctcttatatcagattcactgtatctgggctcatgtttaggtcct 913
Query: 308 tgatccacttggagttgagttttgtgcaaggtgatagatatggatcaattttcatttttt 367
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 tgatccactt-cagttgagttttgtgcaaggtgatagatatggatcaattttcatttttt 854
Query: 368 ggcattcagccatgaccttgagtatttgaaaatcaaattgggttcttctgactgtgtgca 427
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 853 ggcattcagccatgaccttttgtatttgcaaatcaaattgggttcttctgactgtgtgca 794
Query: 428 aacattttgttgtctgggcaatcttgccagtctccaagatcatttttgaagggcattatg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aacattttgttgtctgggcaatcttgccagtctccaagatcatttttgaagggcattatg 734
Query: 488 gcaggaagtatccatgtgatctatatgattttaccattaggtaatagtttggatagttaa 547
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 gcaggaagtatgcatgtgatctatatgattttaccattaggtaatagtttggatatttaa 674
Query: 548 atggttgcttcatttgtctttgttcatttatagggttaggaaagacaaaaatggaagatt 607
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 atggttgcttcatttgtctttgttcatttatagggttaggagagacaaaaatggaagatt 614
Query: 608 ttaaaatttgctctgtgatacaagg 632
|||||||||||||||||||||||||
Sbjct: 613 ttaaaatttgctctgtgatacaagg 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
