BAC Information

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BAC

Clone NameMSMg01-062E11
Chromosome3 (Build37)
Map Location 11,568,959 - 11,569,713
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670564, LOC383826, EG667978
Downstream geneLOC667999, EG621965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062E11.T7 (MSMg01no062_e11.b1)MSMg01-062E11.TJ (MSMg01no062_e11.g1)
ACCAG288290AG288291
length1,1781,213
length of high quality
(start - end)		779 (53 - 831)805 (85 - 889)
definitionCHROMAT_FILE: MSMg01no062_e11.b1 PHD_FILE: MSMg01no062_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:42 2005CHROMAT_FILE: MSMg01no062_e11.g1 PHD_FILE: MSMg01no062_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCACTTATTTNNTNTCCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTAGGTGCTTGAATGCCTTTGTTTGTATGATGTATAT
TTGCTCAGTGAGCCATGTCATGCATTTATAAATTATACACTCAAGAATTA
CATAGAAAGAAACCAGGCTTTATTTATATTGCCCTAAATACATCATACTC
TGTCATAAAATGAAAACAGAATTTAACTGAAAAAGAAAGAAAGAACACTA
AAATTCACTGAACGTCTTTGATTGTTTTTTTTTTGTTGTTGTTTTGTTTG
TTTGGTTTGTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCT
GTCCTGGAACTCACCTAATCTTAAGTCTAAACACAGGCAGTCGCACACAC
ACACACACACACACACACACATACACACACACACACACACACTCACACAT
GCATGCATGTGTGTTTATATATGTATGCATATTCCCTCTCTTTGGTCTTT
TAAGAAAAACATACAAAAATTCACTTAGTAAATTTTTCTTGTTGGGTATG
GAGAGTATACCAACATCTCAGTAGAATTTAAATATTAATTTAATATATAT
AGCAACCTAATAATCTTAGAATTATCACTCTCCTTTAATACTCAAGTAAA
GGGAAATTCAACAAGTTCAAGGAATTTGAAAATGCATACATGAGAGTTCA
CTGGGTTCAAGAGTGATGTTGATATCCACTGGTTTCTGAGAGCTGCTCTG
GATCATCCATATCCATATACTAATTGTATAACATCAAGTGTGATTCTCTC
TTTTATATTAAGATCCACAGAGGAACCACTTAATCAGGCTATTCCAAACA
GGCAGAATTCATATTTAATTCTCACTGCTTCACTCCAAAAAAGGATGGCC
TGTTTATGACTTTTGTAATTTCAAAAAAATGTGTCGTCCATGTACTTGGC
AGGGAAAAGAAACCCCCTTGAGGAAAAAACAGGGGCTGGAAATAAAAAAG
GGAGGAACTTTATTGTTAGGTGGAAAAGGTATCCATATCCCCTTGGTCCT
TGCCTTTGTTTGGGGGGAATAGTTTTTTTTTTTTCTTTCTGATACAAAAA
AAATGTTTCTTTTCTTATTTTCCCCCCTTTTAATGTATTAAAATCTCTCG
CTTTTTTCTCTAATAGTTTTGTTTATAA

CCCTTTATTTTTTTAAGAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGAAGTACCAAAT
GGCTGAGAAGCACCTGACCAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATATGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTATACAACCACTCT
GGAAATCAGTCTGGTGACTTCTCAGAAAATTGAACATAGTACTACCAGAG
GATCCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTCTCAACCGG
TAAGAAGGTCACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTAGAAAAAACCCAGATGCCCCTCAACAAAGGAATGGATACAG
AAAATATGGTACATTTACACAATGGAGTACTACTCAACTATTAAAAAAAT
GAATTTATGAAATTCCTAGGCAAATGGATGGACATGGACGGCTTCATCCT
TAGTGAGTTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACGGA
TAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAA
TTTGCTAAACGCATGAAATTCAAGAAGAACGAAGACCAAAGTGTGGATAC
TTTGTCCCTTCTTAGAAATGGGAACAAATCACCTATGGAAGGAGTTACAG
AGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCA
TATGCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCA
TACACTAACAAGATTTTGCTGAAAGGAACCAGATATAGCTGTCTCTTGTG
AGACTATGCTGTGGCCCTAGCCAACACAGAAGTGGATGATCACAGAAAGC
TATTGAATGGATCCCACGGCCTTCAATGAAGGAACTAAAAAAAGGACCCA
AGGAGCTTAAGGGAACTGCAACCCTATTAGGGTAACCACAATATGAATTA
TCCGGTACCCAGAAGTTCTTGTTTCTTACGGGATAGGATCAAAAAAGGCC
CATGGGTTAAGGAAGGTGTAAATTTTTTCCGGGTGTCTTCTTTCCTTCGT
ATTTCCTCCCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_e11.b1 MSMg01no062_e11.b1 CHROMAT_FILE:
MSMg01no062_e11.b1 PHD_FILE: MSMg01no062_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:42 2005
         (779 letters)



>mm_chr3_11568755_11569933
          Length = 1179

 Score = 1255 bits (649), Expect = 0.0
 Identities = 736/783 (93%), Gaps = 36/783 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaggtgcttgaatgcctttgtttgtatgatgtatatttgctcagtgagccat 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaggtgcttgaatgcatttgtttgtatgatgtatatttgctcagtgagccat 264

                                                                       
Query: 65  gtcatgcatttataaattatacactcaagaattacatagaaagaaaccaggctttattta 124
           || |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| 
Sbjct: 265 gtaatgcatttataaattatatagtcaagaattacatagaaagaaaccaggctttattt- 323

                                                                       
Query: 125 tattgccctaaatacatcatactctgtcataaaatgaaaacagaatttaactgaaaaaga 184
                      ||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 324 -----------atacatcatactctgtcataaaatgaaaacagaatttaactgaa----a 368

                                                                       
Query: 185 aagaaagaacactaaaattcactgaacgtctttgattgttttttttttgttgttgttttg 244
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 369 aagaaagaacactaaaattcactgaacgtctttgattg--ttttttttgttgttgttttg 426

                                                                       
Query: 245 tttgtttg---g-tttg-tttg--ttttttcgagacagggtttctctgtgtagccctggc 297
           ||||||||   | |||| ||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttgtttgtttgttttgttttgttttttttcgagacagggtttctctgtgtagccctggc 486

                                                                       
Query: 298 tgtcctggaactcacctaatcttaagtctaaacacaggcagtcgcacacacacacacaca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgtcctggaactcacctaatcttaagtctaaacacaggcagtcgcacacacacacacaca 546

                                                                       
Query: 358 cacacacacacatacacacacacacacacacactcacacatgcatgcatgtgtgtttata 417
           |||          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cac----------acacacacacacacacacactcacacatgcatgcatgtgtgtttata 596

                                                                       
Query: 418 tatgtatgcatattccctctctttggtcttttaagaaaaacatacaaaaattcacttagt 477
           ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 597 tatgtatgcatattccccctctttggtcttttaaggaaaacatataaaaattcacttagt 656

                                                                       
Query: 478 aaatttttcttgttgggtatggagagtataccaacatctcagtagaatttaaatattaat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aaatttttcttgttgggtatggagagtataccaacatctcagtagaatttaaatattaat 716

                                                                       
Query: 538 ttaatatatatagcaacctaataatcttagaattatcactctcctttaatactcaagtaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttaatatatatagcaacctaataatcttagaattatcactctcctttaatactcaagtaa 776

                                                                       
Query: 598 agggaaattcaacaagttcaaggaatttgaaaatgcatacatgagagttcactgggttca 657
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 777 agggaaattcaacaagttcaaggaatttgaaaatgcatacctgagagttcactgggttaa 836

                                                                       
Query: 658 agagtgatgttgatatccactggtttctgagagctgctctggatcatccatatccatata 717
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 837 agagtgatgttgatatccaccggtttctgagagctgctctggatcatccatatccatata 896

                                                                       
Query: 718 ctaattgtataacatc-aagtgtgattctctcttttatattaagatccacagaggaacca 776
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ctaattgtagaacatccaagtgtgattctctcttttatattaagatccacagaggaacca 956

              
Query: 777 ctt 779
           |||
Sbjct: 957 ctt 959


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 779
Length of database: 1179
Length adjustment: 10
Effective length of query: 769
Effective length of database: 1169
Effective search space:   898961
Effective search space used:   898961
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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