BAC Information

Click to search

BAC

Clone NameMSMg01-062H13
Chromosome3 (Build37)
Map Location 110,337,240 - 110,337,630
singlet/doubletsinglet
Overlap genenone
Upstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062H13.T7 (MSMg01no062_h13.b1)MSMg01-062H13.TJ (MSMg01no062_h13.g1)
ACCAG288438AG288439
length1,1821,206
length of high quality
(start - end)
392 (125 - 516)638 (126 - 763)
definitionCHROMAT_FILE: MSMg01no062_h13.b1 PHD_FILE: MSMg01no062_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:06 2005CHROMAT_FILE: MSMg01no062_h13.g1 PHD_FILE: MSMg01no062_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGTCTTTTNTNAGCATTGGCGCTAAGACTCCTAAGGGAGAGGATCCGCG
GAATTCACCAAGGTAAGGAAGCTTTAAAAACGCCTTAGGGAAGGAGCATG
TGGGAACATACCCTTTAAAACAAAAGCAGCCTGAGTGCCTGGGAGCAGCA
TGAACAAAGGATCTTGAGTTGATAAAGCTCTTACTGATTTCAAGAAGAAA
CTAGGTGGTCAAGGTGGCTTCAAATATTTTCACAAGGGGGAGAAAGATTG
CAGAGTGATTCTGCCTAGATTTCGGGGATTTTGACTTTTACTCTAGGAAA
AACAGGGGTATTTAGTGATTCAGGATTCTACTTGCTCTTTGCATCTGTAG
CAGAGGATGGCCTAAACTGGCATCAGTGGAAGCAGAGCCCCTTGGTCCTG
TATAGGGTTCATACTCCAGCTTAGGGGAATGCTAGACTGGTGAGGCAGGA
GTGAGTGGGTAGGGGAGCTCCCTCAGAAAAGCAGAGTGGAGAGGGAATGG
GATAGGGGGGTTGTGNTTCTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTCNTTTTTTTTTTTTTTTTCTTNTTTTTTCTCTCTCTTTCTTTCCTC
TTTTTTCTTCTCTCTTTTCTTTCTTCTCTCTTCTTCTTCTTTTTTTTTTC
TCCTTCTTTTTTTTTTTTTCTCCTCTTTTCTTTTCTTTTTTTTTCTTTTC
TTTTTTCTTTTCTTCTTTTCTTCTTTCTCTCTCTCTCTCTTCTCCTTTCT
TTTTTTTTCTTTCTTTCTCTTTTTTTTCTTCTTTTTCTCTTTTTCTTTTC
TTTTTTCTCTTTCCTTTTTTTTTCTCTCTTTTCCTTTTTTTCTTTCCCTT
TTCTCTTCTTTTCTCTTCTTCCTTTTTCCCCTTTCTCTTTTTTCTTTTTT
TTTCTTTTTCTTTTTTTTCCTTCTCTTTCTTTTCTTTTTTCTTTTTTTTT
CTCTCTTCTCTTTCTTTCTTTTTNTTTCTCTTTTTTTCTTTTTTTTTNCT
CTTTTCTTCTTTCTCTTTCTCTTCTTCTTTCTTCTTTCCTTTTTTTCTTT
CTTTTCTTTCCTCCTTTCCTCTTTCTTCCCTCTCTTTTTTCCCTCCCTTT
TTTTCTTTTTTCCTTTCCCTTTCTTCTTTCTTTTTTTCTTTTTTTTTTCT
TTCTCTCTTCTCTTTTTCTTTCTTCTTTTCTC
CCTTATTTTTNNNTACGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCATTTAAACTGAGGAATACCAAATG
GCTGATAAGCACCTGCCTTAGAGTTCAACATCCCTAATCATCAGTGAAAT
GCAAATCAAGCAATCCTGAGATTCCACTTCACACTAGTCAAATGACTACG
ATAAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGG
AACACTCCACCATTGTTGGTGGGATTTCAAGCTGGTATAACCACTCTAGA
AATCAGTTTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAAGAT
CCAGCAATACCACTCCTAGGCATATACCCAGAAGATGTTCCAACTTGTAA
TATTTACACATGCTCAACTATGTTCATATCAGCCTTATTTATAGTAACCA
GAAGCTGGAAAGAACCCAGATGTCTCCAAACAGAGGAATGGATACAGGAA
ATGTGGTACATTTACACAATGGAGTACTACTAAACTATTAAAAACGATGA
ACTTATGAAATTCTTACACAAATGGATGTATCTGGAGGATATCATCCTGA
GTGTGGTAACCCAATCACAAAAGAACACACACGATATGCACTCACTGGTA
AGTGGATATTAGCCCAGAAATTTAGAATACCCAAGGTGTAATTTGAAAAA
CACATGAAACTCAACAAGGGAAGACCAAACTGTGGATACTTTGATCCTTC
TTAGAAGACAGAACAAAATACCCATGTAAGGATTTACAGAGGCAAAGTTT
GGAGCTGTGAATGAAGGAGGAACCAGCCAGAGACTGGCCCAGCTGGGGAT
TTATCCCATATACAACCACCAAACCCAGACACTTATTCCATATGCCCAAA
AGATTTCATTGTCAGGACCCTGATATAGTTGTCTCCTGTGAGGCTATGCC
CGGCAAATACTGAAGTGGATTTGCTTACAGGTCATCGGTTGAAGGAAACT
TAAGCTCCCCCAATGATAGGACCTTGACTATAATAATTATTCCTGGACTT
TAAGGGGGTCTGCCCTCCCTATTGTATTGAATAACCATTTTGTATCTATC
TTGTACCCTTCTAAGTTCCTTGTGTAACTTTCCCCCCCATTTTAATATAA
TCTCCTTGGTGTGGAATCTCTTGTTCTCTTNGTCACTTTATATTNATATA
ATATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_h13.b1 MSMg01no062_h13.b1 CHROMAT_FILE:
MSMg01no062_h13.b1 PHD_FILE: MSMg01no062_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:06 2005
         (392 letters)



>mm_chr3_110337040_110337831
          Length = 792

 Score =  694 bits (359), Expect = 0.0
 Identities = 383/391 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagcctgagtgcctgggagcagcatgaacaaaggatcttgagttgataaagctcttac 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagtctgagtgcctgggagcagcatgaacaaaggatcttgagttgataaagctcttac 260

                                                                       
Query: 61  tgatttcaagaagaaactaggtggtcaaggtggcttcaaatattttcacaagggggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatttcaagaagaaactaggtggtcaaggtggcttcaaatattttcacaagggggagaa 320

                                                                       
Query: 121 agattgcagagtgattctgcctagatttcggggattttgacttttactctaggaaaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 agattgcagagtgattctgcctagatttcggggattttgacttttactccaggaaaaaca 380

                                                                       
Query: 181 ggggtatttagtgattcaggattctacttgctctttgcatctgtagcagaggatggccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ggggtatttagtgattcaggattctacttgctctttgcatctgtagcagaggatggcctt 440

                                                                       
Query: 241 aactggcatcagtggaagcagagccccttggtcctgtatagggttcatactccagcttag 300
           ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct: 441 aactggcatcagtggaagcggagccccttggtcctgtagaggattcatactccagcttag 500

                                                                       
Query: 301 gggaatgctagactggtgaggcaggagtgagtgggtaggggagctccctcagaaaagcag 360
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaatgctagagtggtgaggcaagagtgagtgggtaggggagctccctcagaaaagcag 560

                                          
Query: 361 agtggagagggaatgggataggggggttgtg 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 agtggagagggaatgggataggggggttgtg 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)