Query= MSMg01no062_i18.b1 MSMg01no062_i18.b1 CHROMAT_FILE:
MSMg01no062_i18.b1 PHD_FILE: MSMg01no062_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:15 2005
(704 letters)
>mm_chr3_80861752_80862852
Length = 1101
Score = 1191 bits (616), Expect = 0.0
Identities = 683/706 (96%), Gaps = 7/706 (0%)
Strand = Plus / Minus
Query: 1 tgcaaagtcagaatgaaatgagtcataaccttccacatctcctgtgcgcgcgtgttagtg 60
|||||||| ||||| |||||||||||||| |||||||||||||| | | ||||||||
Sbjct: 901 tgcaaagtgagaatcaaatgagtcataacagtccacatctcctgt--gtgtgtgttagt- 845
Query: 61 gggtgacctccgattcctaaggaagtcaagggcagcatcaagtgagaaaccaccgtcctg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 844 gggtgacctccgattcctaaggaagtcaagggcagcatcaagtgagaaaccaccctcctg 785
Query: 121 cctctctacccctccccccagcaccacatgtgagggccatctgagatgacacaggtttgg 180
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 784 cctctctacccctcctcccagcaccacatgtgaggaccatctgagatgacacaggtttgg 725
Query: 181 tccagccagatgccattacacattggatgacaccggatttgtaacttttggctttacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tccagccagatgccattacacattggatgacaccggatttgtaacttttggctttacttt 665
Query: 241 caggaagggaaaaaaataaaaataaaaaagacccatgccagaaattgagcggcttttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 caggaagggaaaaaaataaaaataaaaaagacccatgccagaaattgagcggcttttctc 605
Query: 301 tttggacaagcccaggtttgccccaag-gacaccagcactggctgaaccctctcttccta 359
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 604 tttggacaagcccaggcatgcccc-agcgacaccagcactggctgaaccctctcttccta 546
Query: 360 ggcctgcctaccaccagaaaagtatgaacattttaactgactgtttcgaaggacccggaa 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 545 ggcctgcctaccaccagaaaagtatgaacattttaaccgactgtttcgaaggacccggaa 486
Query: 420 tagaacttttagtcactcagcctgagcagaagagcagtaaaggaaaagttctctgcttgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tagaacttttagtcactcagcctgagcagaagagcagtaaaggaaaagttctctgcttgt 426
Query: 480 gcaaacatggggcccattttctctatgtgaagatggcaagaaacccctttg-ccccaaat 538
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 425 gcaaacatggggcctattttctctatgtgaagatggcaagaaacccctttgtccccaaat 366
Query: 539 caggatgaatgttttatcactttcaaaagagaaggtaccttctggtccagatacacagaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caggatgaatgttttatcactttcaaaagagaaggtaccttctggtccagatacacagaa 306
Query: 599 aagtgtcctctgcttgacagcttccactttatgctggtcaagtatgtctcttctattgct 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagagtcctctgcttgacagcttccactttatgctggtcaagtatgtctcttctattgct 246
Query: 659 gctgttgatcactgctgtgtcccttgtcaactcaggaccaggggac 704
||| |||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 245 gctattgaccactgctgtgtcc-ttgtcaactcaggaccaggggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1101
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1091
Effective search space: 757154
Effective search space used: 757154
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_i18.g1 MSMg01no062_i18.g1 CHROMAT_FILE:
MSMg01no062_i18.g1 PHD_FILE: MSMg01no062_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:15 2005
(768 letters)
>mm_chr3_80757172_80758339
Length = 1168
Score = 1288 bits (666), Expect = 0.0
Identities = 739/778 (94%), Gaps = 27/778 (3%)
Strand = Plus / Plus
Query: 1 gctatttctctgctcatgcaaagttaaccttta----ggtacttccccaacccacttccc 56
||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 214 gctatttctctgctcatgcaaagttaa----taagcaggtacttccccaa---------- 259
Query: 57 caaagctttgttcattacaatggtggttttacttcacttccaaggacagaccaacctaca 116
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 260 ---agctttgttcattacaatggtggtttttcttcacttccaaggacagaccaacctaga 316
Query: 117 ataaaccttgaaacttttactcttctagacaacaaatttagcaatgaatatgaatagaga 176
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 317 atataccttgaaacttttactcctctagacaacaaatttagcaatgaatatgaacagaga 376
Query: 177 gaactgtgaagaagcctttgatagcatggggccttgagtgatatcattgttctcatttta 236
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaactgtgaagaaacctttgatagcatggggccttgagtgatatcattgttctcatttta 436
Query: 237 ttctggttttgtgacaaacactgtcattaaaagcatttcacaggaggaaagtatttattt 296
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 437 ttctggttttgtgacaaacactgtcactaaaagcatttctcaggaggaaagtatttattt 496
Query: 297 gacttatatttccaggtcacagtccattaccatgtgaaatcatggaagaaacttaggcag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gacttatatttccaggtcacagtccattaccatgtgaaatcatggaagaaacttaggcag 556
Query: 357 aaacttgaagtggaaactttaccagaatgctgggttttgaactcacttgcagactcatgc 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 557 aaacttgaagtggaaactttaccaggatgctgggttttgaactcacttgcagactcatgc 616
Query: 417 attttagctttcttatatag-----gaccacacacctgaggtgtgataccacttg-atag 470
|||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct: 617 attttagctttcttatatagcctaggaccacacgcctgaggtgtgataccacttgcatag 676
Query: 471 gtctggtatcctatataaatgaatattaagacaatccccatcaataatacccacagacca 530
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 677 gtctggtatcctatataaatgaatattaagacaatccccatcagtaatacccacagacca 736
Query: 531 atctaatcaggacaattgcttggttgagacttccttccaggctgtgttaacttgacagtt 590
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 737 atctaatcaggacaattgcttggttgagacttccttccaggctgcgttaacttgacagtt 796
Query: 591 caagttaacgagggtgtgctggctggttttgtgtgtcaacttgatacaaactagagtcat 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 caagttaacgagggtgtgctggctggttttgtgtgtcaacttgatacaaactagagtcat 856
Query: 651 ccaggaggaaaaagcctcagttaaggaaatacctccatgagatccagctgtaagacattt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ccaggaggaaaaagcctcagttaaggaaatacctccatgagatccagctgtaagacattt 916
Query: 711 tctcaattagtgttcaagagggagggcctagcccatggtgagtggtgccttttctggg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tctcaattagtgttcaagagggagggcctagcccatggtgagtggtgccttttctggg 974
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1168
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1158
Effective search space: 877764
Effective search space used: 877764
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
