CCTTTTTTTNNNNGCTGTGGGCGCTATCGACTCCTATGGGAGAGGATCCG
CGGAATTCTTTGTTCAGTTCTGACCTTTAATTTTATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATCTGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCTATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGT
TTCACTTGGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGGCAGAAGTTCTTT
TATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGACA
AATTTGCAAATTGCTCCTTCCAATTCGTTGAAGAATTGAGTTGGAATTTT
GATGGGGATTGCATTGAATCTGTATATTGCTTTTGGCAAGATATCCATTT
TTTTCAATGTTGATTCTGCCTATTTATGTACATGTTAGATCTTTCCATTT
TCTGAGATTTTTCCTTATTTTCTTTCTTCAAAAATTTGAATTTTTTTTTT
ATGATTCTTTTCTTTTCTTAATTTGATTCCGCCCAGATCTTTTATATTTT
TTTGTGTCTATTTGTCAAGTTGTTGTTTTCCTTATTTTTTCTTCCTCTGT
CTTTTCCTCTTTATCTAAAAGGGCTTTTTATTTCCTTTTTTTTTAATTTT
TTTTCTCTCTCCTTCTCTCTCATCTTTTTACTATTCCTTATAGTTTTTCT
TTTTCTCATCTCTTTACTCCTCTTTTTATTCCTTTTTCCTTTTTCTTTCT
TCAA

CTTCTCTTTTTTNNAACATGGNAGNCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAACTTTTTTTGCTGTAGA
TATAAAAGAAGAGCTATACTTACAATAAGGGGAAATCCCAGTGTGGAAAA
CCAATGCCATCCTAATTACTGAGTTCAATGTTCATAGAGAGAGGGCTGGG
AGGAGGAGCCGCGGCTGTGCTCCCTATAATAGTTTACTGAGTTACAACGT
TTACAACCAGCTCCCTCTGCTCTGACACCTCTGTGCAGTTGACCATGTCT
TGTTCTGACTCAGCTGCTGTTGTACACATCAAATGTTTTTGATCAAATCC
GTGTACAGCCCAGTGTTTCCCTTGAAATCACTCTCCCCAGATGGATAAAG
TCTTCGTATTCCTTTCATTGGCAATAAAGGTATGGCAAGGGCTTGGGGGA
TGGCAAGGCTGCCGGCTGCAGCTTCTACAGACTGAAAGACACTTGAAGAG
AGGCGACATGACCATTGAGAGCCTGTCATCTGAGCCTGGAGAATGCCTAT
GCACAGAGGAGACATTATTCAGATACCAGGGATGTCCTGTGTCTGTCACC
TCTTCAGAATAACAACTCCCAGGCTCCAGTGAAACCTGTCCTAACTCTGG
GGACCCTGCCTTCTTCAATGCTGGCAGTGACCTGCACAGACAGGATTTCT
CACTCCCTTTCTGGACAGGCTGGGCTCTGTTTTATCCTGGCGCTTTGTGG
TTATGAGCTAAGACCTTCTGCCTCTCCCACAACATAAACCTTCTTTCTCT
GGAAAAAAAAAAGAAGCTGTGCTAGGGAGGGCAGACTTGCATTGCCTCAT
TCTCTTTGAGGCCTCATGATGACTCGAGATTAAGCAGACCACCAAATAAT
CTCATTTAGCGATACACATTACCCCTCAGTTAGATCATTTGTGGATTTCT
TTTTCCTTTGTCCTCTGTTGGGGCAAAATTGCTTAGAAAAGAATCCTTTG
GAATGAAAACCCAGTTACTCGGTTATTTAGGTTAATTTAAAATTTTCTTT
GGTTACAATTCCCCTGGCTTAAAATTTTCTTGGCCACATTTTAGGTTTTG
AATTTTTACCACACAACTTTTTTATTTTGGGCCCCCGTTTTTTTTTGTTC
CTAATGTGATCAACTATTATAATATTTCCCTGGTCTTCTTTTTTTTTTTT
ATCTAGACAATTCTCC

Query= MSMg01no062_k08.g1 MSMg01no062_k08.g1 CHROMAT_FILE:
MSMg01no062_k08.g1 PHD_FILE: MSMg01no062_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:27 2005
         (780 letters)



>mm_chr3_39678581_39679759
          Length = 1179

 Score = 1361 bits (704), Expect = 0.0
 Identities = 762/786 (96%), Gaps = 13/786 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttt-ttttgctgtagatataaaagaagagctat--acttacaataaggggaaatcccag 57
           |||| |||||||||||||||||||||||||||||  |   ||||||||||||||||  ||
Sbjct: 979 ctttgttttgctgtagatataaaagaagagctataaa---acaataaggggaaatcagag 923

                                                                       
Query: 58  tgtggaaaaccaatgccatcctaattactgagttcaatgttcatagagagagggctggga 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tgtggaaaaccaatgccatcctaattactgagttcaatgttcatagagagagggctggga 863

                                                                       
Query: 118 ggaggagccgcggctgtgctccctataatagtttactgagttacaacgtttacaaccagc 177
           |||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||
Sbjct: 862 ggaggagccgcggctgtgctccctataatagtttaccgagtt---acgtttacaaccagc 806

                                                                       
Query: 178 tccctctgctctgacacctctgtgcagttgaccatgtcttgttctgactcagctgctgtt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tccctctgctctgacacctctgtgcagttgaccatgtcttgttctgactcagctgctgtt 746

                                                                       
Query: 238 gtacacatcaaatgtttttgatcaaatccgtgtacagcccagtgtttcccttgaaatcac 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtacacatcaaatgtttttgatcaaatccgtgtacagcccagtgtttcccttgaaatcac 686

                                                                       
Query: 298 tctccccagatggataaagtcttcgtattcctttcattggcaataaaggtatggcaaggg 357
           |||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 685 tctctccagatggataaagtcttcacattcctttcattggcaataaaggtatggcaaggg 626

                                                                       
Query: 358 cttgggggatggcaaggctgccggctgcagcttctacagactgaaagacacttgaagaga 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttgggggatggcaaggctgccggctgcagcttctacagactgaaagacacttgaagaga 566

                                                                       
Query: 418 ggcgacatgaccattgagagcctgtcatctgagcctggagaatgcctatgcacagaggag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcgacatgaccattgagagcctgtcatctgagcctggagaatgcctatgcacagaggag 506

                                                                       
Query: 478 acattattcagataccagggatgtcctgtgtctgtcacctcttcagaataacaactccca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acattattcagataccagggatgtcctgtgtctgtcacctcttcagaataacaactccca 446

                                                                       
Query: 538 ggctccagtgaaacctgtcctaactctggggaccctgccttcttcaatgctggcagtgac 597
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggctccagtcaagcctgtcctaactctggggaccctgccttcttcaatgctggcagtgac 386

                                                                       
Query: 598 ctgcacagacaggatttctcactccctttctggacaggctgggctctgttttatcctggc 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcacagacaggatttctcactccctttctggacaggctgggctctgttttatcctggc 326

                                                                       
Query: 658 gctttgtggttatgagctaagaccttctgcctctcccacaacataaaccttctttctctg 717
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 325 gctttgtggttatgagctaagaccttccgcctctcccacaacacaaaccttctttctctg 266

                                                                       
Query: 718 gaaaaaaaa---aagaagctgtgctagggagggcagacttgcattgcctcattctctttg 774
           |||||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 gaaaaaaaataaaagaagctgcgctagggagggcagact-gcattgcctcattctctttg 207

                 
Query: 775 aggcct 780
           ||||||
Sbjct: 206 aggcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 780
Length of database: 1179
Length adjustment: 10
Effective length of query: 770
Effective length of database: 1169
Effective search space:   900130
Effective search space used:   900130
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)