Query= MSMg01no062_k14.b1 MSMg01no062_k14.b1 CHROMAT_FILE:
MSMg01no062_k14.b1 PHD_FILE: MSMg01no062_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:29 2005
(534 letters)
>mm_chr3_123558914_123559847
Length = 934
Score = 903 bits (467), Expect = 0.0
Identities = 516/539 (95%), Gaps = 14/539 (2%)
Strand = Plus / Plus
Query: 1 aagacaaaataccttataacactaatatccct---atatgaatagctgcgcgcttttatg 57
|||||||||||||||||||||||||||| | ||||||||||||| | | ||||||
Sbjct: 201 aagacaaaataccttataacactaatat---tttaatatgaatagctgtgtgtttttatt 257
Query: 58 attacatgtgtgttttatgaagagaagtttgttttatgaatagaattacatttttatggt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 attacatgtgtgttttatgaagagaagtttgttttatgaatagaattacatttttatggt 317
Query: 118 tccactaattgtaaagaaaatactattgctattcttaaagataattttaattattagaac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccactaattgtaaagaaaatactattgctattcttaaagataattttaattattagaac 377
Query: 178 ccttttatttatgtgttatgaaacattaaatccaaagatgcatattacccatgtatatgg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccttttatttatgtgttatgaaacattaaatccaaagatgcatattacccatgtatatgg 437
Query: 238 tagacttctctgagagacagtaaatataaatctatttcccatttccagtttccgactgtg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tagacttctctgagagacagtaaatataaatctatttcccatttccagtttccgactgtg 497
Query: 298 ctcatccactgtcctga----tttttatgtactcacactgtgcttaggaaggacggattg 353
||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 498 ctcatccactgtcctgaggggt----atgtactcacactgtgcttaggaaggacggattg 553
Query: 354 ttctgtggcaaataaggagcttcacatgttgttcaggagacctagagtggtacatgaaca 413
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttctgtgggaaataaggagtttcacatgttgttcaggagacctagagtggtacatgaaca 613
Query: 414 cgtccccctttcaggaagtgatttaaatcatggctggtagtgtttatgggttgttagaag 473
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cgtccccctttcaggaagtgaattaaatcatggctggtagtgtttatgggttgttagaag 673
Query: 474 attaatgatagcctctgatgtctgccgtttctaaagagtacacaccatcctaatctgca 532
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 674 attaatgatagcctccgatgtctgctgtttctaaagagtacacaccatcctaatctgca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_k14.g1 MSMg01no062_k14.g1 CHROMAT_FILE:
MSMg01no062_k14.g1 PHD_FILE: MSMg01no062_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:29 2005
(592 letters)
>mm_chr3_123763850_123764841
Length = 992
Score = 1050 bits (543), Expect = 0.0
Identities = 580/595 (97%), Gaps = 6/595 (1%)
Strand = Plus / Minus
Query: 1 ggtaatgttggaagcaatgctatcaactcctt---aaaaatgataagtacaccacaaaga 57
|||||||||||||||||||||||||| ||| |||||||||||||| || |||||||
Sbjct: 792 ggtaatgttggaagcaatgctatcaa---cttaagaaaaatgataagtagacaacaaaga 736
Query: 58 agaatcagacagaggagagcgtctagaaaataagcctagagaatgccacaggcaaatgaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agaatcagacagaggagagcgtctagaaaataagcctagagaatgccacaggcaaatgaa 676
Query: 118 ttcagataacagtggcaaacagtatttcattcctgatgctgttgtaggacagctatctgc 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 675 ttcagataacagtggcaaacagtatttcattcctgatgctgttgtagaacagctatctgc 616
Query: 178 tgcctctttccatccactgtatgtgacttaataactactgactttgattaaataaaggca 237
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgcctctttctacccactgtatgtgacttaataactactgactttgattaaataaaggca 556
Query: 238 tctatctttcatacccataaagtacataagagaaattgactaaaaatcttggaaaaacaa 297
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 555 tctatctttcatacccataaagtacataagagaaattgactaaaaatcttgggaaaacaa 496
Query: 298 caaaacgtggtttgaagaatttaatggaggctggtttcctttgagttgcatgattctgtg 357
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caaaatgtggtttgaagaagctaatggaggctggtttcctttgagttgcatgattctgtg 436
Query: 358 gggacacctatgcttaaggcctgaaggtcatgaactctcaaaagactagtggaagaccag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gggacacctatgcttaaggcctgaaggtcatgaactctcaaaagactagtggaagaccag 376
Query: 418 ctggatagtatactttgggtctctactagcgtgaaagaaaattgttttcctgccttagta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctggatagtatactttgggtctctactagcgtgaaagaaaattgttttcctgccttagta 316
Query: 478 gcaaagttagatttactcccatctccaaagctgtgaagtccttagatgacattctgccag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcaaagttagatttactcccatctccaaagctgtgaagtccttagatgacattctgccag 256
Query: 538 aatctaggtcttggtctctgtggatagcgctatgatgtcacttcttacacacagc 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatctaggtcttggtctctgtggatagcgctatgatgtcacttcttacacacagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
