Query= MSMg01no062_n21.b1 MSMg01no062_n21.b1 CHROMAT_FILE:
MSMg01no062_n21.b1 PHD_FILE: MSMg01no062_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:54 2005
(683 letters)
>mm_chr3_146226807_146227888
Length = 1082
Score = 1220 bits (631), Expect = 0.0
Identities = 670/691 (96%), Gaps = 17/691 (2%)
Strand = Plus / Plus
Query: 1 gatcatcaaaagttacctgttagcaatacccttaa----tttcttgtcttgcgttttccc 56
||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 201 gatcatcaaaagttacctgttagcaatac----aagtactttcttgtcttgggttttccc 256
Query: 57 acaagttctgatggccaaataactaaaatcagtaggtcagagccaccgtaagtgccaggc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acaagttctgatggccaaataactaaaatcagtaggtcagagccaccgtaagtgccaggc 316
Query: 117 tcaacacaagttaaaaaattagagatgaagagtcacaggcagcagaagacctgggccttg 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcaacacaagttaaaaaactagagatgaagagtcacaggcagcagaagacctgggccttg 376
Query: 177 acagatttccttcatgtctatggaatgggggaggggggctggagggaggctgtggaggga 236
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 377 acagatttccttcatgtctatggaatgggggaggggggctgggggg-ggctggggaggga 435
Query: 237 cctctctagattcttttatgtgtgtttctgaaatccttggaatataactttgcaggtgaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctctctagattcttttatgtgtgtttctgaaatccttggaatataactttgcaggtgaa 495
Query: 297 attcgaagctgtctgatc----tttttgtctaacctcatctgttttgttttaaacttggg 352
|||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 496 attcgaagctgtctgatcaaagt----gtctaacctcatctgttttgttttaaacttggg 551
Query: 353 gctggaggaggcaaaacaaaaccaagaaaaacaatgaatatgccccggaaatcaaatcca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gctggaggaggcaaaacaaaaccaagaaaaacaatgaatatgccccggaaatcaaatcca 611
Query: 413 acagcgtacgtttctggtcagcagggggcgcactgttcctttactctgggaagatttttt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acagcgtacgtttctggtcagcagggggcgcactgttcctttactctgggaagatttttt 671
Query: 473 tcacctaggcaacaagtcttctttaataatgactacatcctagcaacaggaggaaaaaat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcacctaggcaacaagtcttctttaataatgactacatcctagcaacaggaggaaaaaat 731
Query: 533 aatgaaaaaaaaatcaatacattttctccctcgtggttgctattttttaaaatagctatt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aatgaaaaaaaaatcaatacattttctccctcgtggttgctattttttaaaatagctatt 791
Query: 593 tttgccagtataattgaggcgtgttgccataggacgggatccttggttgtctttttgttg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tttgccagtataattgaggcgtgttgccataggacgggatccttggttgtctttttgttg 851
Query: 653 tttctctgttctgtccagtctctttctgatt 683
|||||||||||||||||||||||||||||||
Sbjct: 852 tttctctgttctgtccagtctctttctgatt 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space: 721456
Effective search space used: 721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_n21.g1 MSMg01no062_n21.g1 CHROMAT_FILE:
MSMg01no062_n21.g1 PHD_FILE: MSMg01no062_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:54 2005
(665 letters)
>mm_chr3_146371809_146372873
Length = 1065
Score = 600 bits (310), Expect = e-175
Identities = 325/330 (98%)
Strand = Plus / Minus
Query: 336 cagcaaggctcttgggaatctacatgtatgacacaggtgcacgctgccagaaacatctcc 395
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1065 cagcaaggctcttgggaatctacatatatgacacaggtgcacgctgccagaaacatctcc 1006
Query: 396 ggttcattccacatttcttatgaactaacgttggatcgttgcatgttcacaaacctttcc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 ggttcattccacatttcttatgaactaacgttggatcgttgcatgttcacaaacctttcc 946
Query: 456 atgtttctaaaccttttcatgactctcattcatttacataatctcctccaggcttagggc 515
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 945 atgtttctaaaccttttcatgactctcattcatttacatgatctcctccgggcttagggc 886
Query: 516 tcacactataagaaactgtgctcatcacgaggtacgtagctaacgtagctacagggatgg 575
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 885 tcacactataagaaactgtgctcatcatgaggtacgtagcgaacgtagctacagggatgg 826
Query: 576 tagtaatacaaacaaacaagctatctagaaaatatcattcagcacagattggaacataaa 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tagtaatacaaacaaacaagctatctagaaaatatcattcagcacagattggaacataaa 766
Query: 636 acaacaacacaaaatgagaggacacaggtc 665
||||||||||||||||||||||||||||||
Sbjct: 765 acaacaacacaaaatgagaggacacaggtc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
