BAC Information

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BAC

Clone NameMSMg01-063A11
Chromosome3 (Build37)
Map Location 29,062,119 - 29,062,643
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A11.T7 (MSMg01no063_a11.b1)MSMg01-063A11.TJ (MSMg01no063_a11.g1)
ACCAG288864AG288865
length676650
length of high quality
(start - end)
525 (55 - 579)213 (74 - 286)
definitionCHROMAT_FILE: MSMg01no063_a11.b1 PHD_FILE: MSMg01no063_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:13 2005CHROMAT_FILE: MSMg01no063_a11.g1 PHD_FILE: MSMg01no063_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAAA
ATAACCTTCACAGCACCCTTAGAGTTAGCCCTCAGCACACCCAGATCATG
CATCAGCAACTTTTTGCTGACTACCAGACCAGACCTCCATTGCCATCAAT
TTCTGTATTCTCAGAAGTCTGTTAAAGTGCTAATAGATTATCATGAAGCA
ATCATGGATTCTTTGTTTAACTGTGCTTAATGAAACAATGGAAATAATCT
GATTGGAAGAAAAGAAAATGTGAATTATAAAAACCACAATGAGTATCCAA
AATAACAAAGGAAAACTGTTGTATAGAAACTTCCTCTAGAATGAAAACCC
TCTATCTTGGATAGAAGCTCATTAAGATGCAGGATGCTCACAGGGGTAGC
AGATTGAATAATAGAATGTTCTAAGGGAGACAGAACATTCCACCTTACAA
GGAAGTTTGCTAAATACAGAAGTACTCAAAGTTTCAGGAAGTCCCTGAAA
TTGACAAAAAGCCCTTGTCCTCTCAAGCACATATAAGCCTGGACTGCTGA
GAGACATTCTTGGGACAAGCAAGCTGCCTATAAGAAGCAGAGGGCAGCCT
AAATGGCACCTGATAGTGGCAGAAAGCAACAGATCTACCAGGAGAGGACA
TTTTCTGATCTGTTGAGCTGCCTGCA
TGGGGCGCCTGTCCTCGACTTTAGGTGACCTATGATGCTCCGCGGAATTC
CAGATGGAGAAAGAAAGAAGATGAGAGAATACAAAGGAAACCATAGGTAT
GGTGGTACATGCCAGGAATCCCAGCATTTGATTGGTAGAGTTAGAAGGAT
CCAGAGTTGAAGGTCATCTTTCCTATATATGTAGTGAGCTGAGCTTTGAG
GCCAGTCTGTGATTCATGGGACCCTGTCTCCGAAGAGTAGCTACATGTAG
TAGTGCATGCTTGCAATCCCAGCTCTGGATAGGAATGCAGACAGAGGCAG
GAGAGCCATAGCTGGGCCACAGAGTGTTTAATCCCCGCCCTCACCCCCAA
ATTGAACGAAACTTTATCGGAAAGGAAGATATAGGCCTGGTATTAATTTG
AAAAAGACTTTTGGTGGAAGTTGGGGGGTTTTTGGAACCCACGGGGCAAG
TTTTTTTATTGTAATTCTCCCGGCCAATATTCCCCTTTTAATAACGTTGG
GCTTTTAATAAAACGAAAGGGGCCCTGGGTTTTGGCCTTTTCGGTGTCGG
GCGAAACAAATACCCGTGGGCCATAAAAAAAACATGGGGGGACAGAAAAA
AAGGCTTTTTCGTTGTGTTTTTCCCCCCTCCCCAGGGTGGTGCGCCCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a11.b1 MSMg01no063_a11.b1 CHROMAT_FILE:
MSMg01no063_a11.b1 PHD_FILE: MSMg01no063_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:13 2005
         (525 letters)



>mm_chr3_29062065_29062989
          Length = 925

 Score =  971 bits (502), Expect = 0.0
 Identities = 520/526 (98%), Gaps = 2/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttcacagcacccttagagttagccctcagcacacccagatcatgcatcagcaactttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccttcacagcacccttagagttagccctcagcacacccagatcatgcatcagcaactttt 520

                                                                       
Query: 61  tgctgactaccagaccagacctccattgccatcaatttctgtattctcagaagtctgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgctgactaccagaccagacctccattgccatcaatttctgtattctcagaagtctgtta 460

                                                                       
Query: 121 aagtgctaatagattatcatgaagcaatcatggattctttgtttaa-ctgtgcttaatga 179
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 459 aagtgctaatagattatcatgaagcaatcatggattctttgtttaacct-tgcttaatga 401

                                                                       
Query: 180 aacaatggaaataatctgattggaagaaaagaaaatgtgaattataaaaaccacaatgag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacaatggaaataatctgattggaagaaaagaaaatgtgaattataaaaaccacaatgag 341

                                                                       
Query: 240 tatccaaaataacaaaggaaaactgttgtatagaaacttcctctagaatgaaaaccctct 299
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tatccaaaataacaaaggaaacctgttgtatagaaacttcctctagaatgaaaaccctct 281

                                                                       
Query: 300 atcttggatagaagctcattaagatgcaggatgctcacaggggtagcagattgaataata 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 280 atcttggatagaagctcattaagacgcaggatgctcacaggggtagcagattgaataata 221

                                                                       
Query: 360 gaatgttctaagggagacagaacattccaccttacaaggaagtttgctaaatacagaagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaatgttctaagggagacagaacattccaccttacaaggaagtttgctaaatacagaagt 161

                                                                       
Query: 420 actcaaagtttcaggaagtccctgaaattgacaaaaagcccttgtcctctcaagcacata 479
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 160 actcaaagtctcaggaagtccctgaaactgacaaaaagcccttgtcctctcaagcacata 101

                                                         
Query: 480 taagcctggactgctgagagacattcttgggacaagcaagctgcct 525
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 taagcctggactgctgagagacattcttgggacaagcaagctgcct 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)