BAC Information

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BAC

Clone NameMSMg01-063D10
Chromosome3 (Build37)
Map Location 128,775,739 - 128,776,018
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668828, LOC100043393, EG668831
Downstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063D10.T7 (MSMg01no063_d10.b1)MSMg01-063D10.TJ (MSMg01no063_d10.g1)
ACCAG289006AG289007
length675660
length of high quality
(start - end)
226 (119 - 344)280 (55 - 334)
definitionCHROMAT_FILE: MSMg01no063_d10.b1 PHD_FILE: MSMg01no063_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:29 2005CHROMAT_FILE: MSMg01no063_d10.g1 PHD_FILE: MSMg01no063_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGTC
ACTTCCTGTTAGAGAAAAGGAACATCTCCTTTAAATACCTTGGGATTTAT
TTTGTTTTACGTATATGAGTGTTTTGCCTGCATGCATGTGTATTAACCTG
TTTGTTCCTGGTGCTGGGGAAGGTCAGCAAAGTCGGCTGGATCCTCTAAA
GTAGCCAACAGGATGGTTGTAGCACCATACGGGTGCTAGGAACCAAAGCC
AGTCCTCTACAGGAGAAACAAGTGTTCTTAACTACTGAGCCATCTCTCCA
GCTGGGTATATACCCTTTAAAGGGAGACAATATTTCAGAAGGAAAGTGTT
AGTGGCTACGCGATCACAATGGAAGAAACCCCATGCTCCAGCAAATACTA
AGAAGAAACCGGCTCTGGGTTTGCTTTCCAAATGAATTTCTTCAATGAAG
GTATGTTCATGATTGTCCACATACATGGTGAGAGTCCTCGAAGACAGGAC
CTTCAGTTTATATCTCTAAATGCAGATCTTGGGAATGGACCAAAACCAAG
GAAGTGCTTTTTTCACTAACTTCAACCTGACCCCTCACAGATGAGCCAAT
CCATGTATAAATAGAAACATGGTAACTCTCAGGTAGTATATGCCAAGGAG
AATCTCTGAATGTCCCTGCTGGCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTCTTTCTGGATCCGATTTGTGATCAGTCGCATTGACAGGATCTC
ACTCATTAATGGATTAACAAATGACTTTACTTCAACGACTAGGTACCATA
AGTAAGCTAAAACCTTGGCTATCTACAACAGTTAGTTGAGTCCCAGATTC
TGTTTAAACTAGGGTCAGTGTGCTCTGTATCTGCACTTCTAACTTAAAAA
CCTCTTTTTAGTTTCTTTGTTTTTATGACACATCTTCATGAGTCATGAGT
CAGTAGGTCGGAAGGATTATCATAGGTGGGTGACTGATTATACCACCGCT
TGCTCATAAATAATGTAGTTTGTCTTTATGCCATTTTTACTTCTACCTTG
GAAGGTAACTTCCGTGGGACTTCCTTTTTCAACCACAGTTACACACTCCA
TCCTCCTTGGAAAAGTTTGTGCTTGTCATTGATCAGTGTTTTAGCTTTGT
TCTCTGTGTGGCATTTCTGTATACTGAAGCAGAAAAAATAAACATTTTCT
ATTTACAAATACTTGTTCTCTGAGGAACACCAGTGTCTTTCTTAGGTGTG
GAAACGGAGTCCAAGGTGTCAAAGGGCTGATGGCATGAAAAGTCATCAGT
AGGATTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_d10.g1 MSMg01no063_d10.g1 CHROMAT_FILE:
MSMg01no063_d10.g1 PHD_FILE: MSMg01no063_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:29 2005
         (280 letters)



>mm_chr3_128775539_128776218
          Length = 680

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttctggatccgatttgtgatcagtcgcattgacaggatctcactcattaatggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 attctttctggatccgatttgtgatcagtcgcattgacaggatctcactcattaatggat 421

                                                                       
Query: 61  taacaaatgactttacttcaacgactaggtaccataagtaagctaaaaccttggctatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taacaaatgactttacttcaacgactaggtaccataagtaagctaaaaccttggctatct 361

                                                                       
Query: 121 acaacagttagttgagtcccagattctgtttaaactagggtcagtgtgctctgtatctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acaacagttagttgagtcccagattctgtttaaactagggtcagtgtgctctgtatctgc 301

                                                                       
Query: 181 acttctaacttaaaaacctctttttagtttctttgtttttatgacacatcttcatgagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acttctaacttaaaaacctctttttagtttctttgtttttatgacacatcttcatgagtc 241

                                                   
Query: 241 atgagtcagtaggtcggaaggattatcataggtgggtgac 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgagtcagtaggtcggaaggattatcataggtgggtgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)