Query= MSMg01no063_e13.b1 MSMg01no063_e13.b1 CHROMAT_FILE:
MSMg01no063_e13.b1 PHD_FILE: MSMg01no063_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:35 2005
(489 letters)
>mm_chr3_124030452_124031341
Length = 890
Score = 926 bits (479), Expect = 0.0
Identities = 485/487 (99%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttttcttgg-aaccatttcttactagttgagaacatacattgtatcatcata 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggaattctttttcttggtaaccatttcttactagttgagaacatacattgtatcatcata 631
Query: 63 gtccacacactaaactagactccttcaatccgtgccaacaggccactcctccctgtcatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtccacacactaaactagactccttcaatccgtgccaacaggccactcctccctgtcatt 571
Query: 123 ccgctgacactgaccccatacttcaacctacaaaactgtctaccattctaaactacttaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccgctgacactgaccccatacttcaacctacaaaactgtctaccattctaaactacttaa 511
Query: 183 tgctaaggagctatcaatataattagaaagcagttacattgttatactcttaacactgtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgctaaggagctatcaatataattagaaagcagttacattgttatactcttaacactgtt 451
Query: 243 ggctttgggtctgagttagtgtgtttacccttgttgcctgccaatcctatacacaaccac 302
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggctttggctctgagttagtgtgtttacccttgttgcctgccaatcctatacacaaccac 391
Query: 303 attttgtgaagaaaaataatcttttacttgtgcattattccttagtgagtttcaactgtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attttgtgaagaaaaataatcttttacttgtgcattattccttagtgagtttcaactgtt 331
Query: 363 tgatctccatctgtgaggagtttccactgctaagagctgactttctcatccctgcaaatg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgatctccatctgtgaggagtttccactgctaagagctgactttctcatccctgcaaatg 271
Query: 423 tgttctttagatggcttagttaattcttagcagatacattggagtacactgagtatattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgttctttagatggcttagttaattcttagcagatacattggagtacactgagtatattt 211
Query: 483 tcattaa 489
|||||||
Sbjct: 210 tcattaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_e13.g1 MSMg01no063_e13.g1 CHROMAT_FILE:
MSMg01no063_e13.g1 PHD_FILE: MSMg01no063_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:35 2005
(541 letters)
>mm_chr3_123911503_123912443
Length = 941
Score = 1002 bits (518), Expect = 0.0
Identities = 536/542 (98%), Gaps = 3/542 (0%)
Strand = Plus / Plus
Query: 1 ctcttctgag-acacagcttataggtgatgtcatggcaggaagggtaaactttcacactc 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctgagtacacagcttataggtgatgtcatggcaggaagggtaaactttcacactc 260
Query: 60 tgttgatagacatgtgaattgctccaaaagtttcatacatctacgtttctttaaagttga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgatagacatgtgaattgctccaaaagtttcatacatctacgtttctttaaagttga 320
Query: 120 aaagtataaatcccataatcttccaaaacagtcttataattacatcacatagcaacaaga 179
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aaagtataaatcccataatcttccaaaacagtcttataattatatcacatagcaacaag- 379
Query: 180 aaaaaatgatataaatataataaagctgtataaaatatacagatacaaactttgtaataa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaaatgatataaatataataaagctgtataaaatatacagatacaaactttgtaataa 439
Query: 240 tctttaaatttttaaaataaaaaaaattaagtatagacttattaaagaaggtaaagactt 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 tctttaaatttttaaaataaaaaaatttaagtatagacttattaaagaaggtaaagactt 499
Query: 300 ctttaaaatgtttattttatttttaattcatgttttacactccataatctactccccgcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttaaaatgtttattttatttttaattcatgttttacactccataatctactccccgcc 559
Query: 360 tcccctatccaccctccaactgttccatgtcccacacctcctccacagtctccacgtaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcccctatccaccctccaactgttccatgtcccacacctcctccacagtctccacgtaga 619
Query: 420 tgcccccacccccacccctcctgacctctaaactctttggggtctccagtctcttgaggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcccccacccccacccctcctgacctctaaactctttggggtctccagtctcttgaggg 679
Query: 480 ttaggtgcatcataaaactcaagacaaacacaagcaaaagaaaaaaatctatactattca 539
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 680 ttaggtgcatcataaaactcaagaaaaacacaagcaaaagaaaaaa-tctatactattca 738
Query: 540 gc 541
||
Sbjct: 739 gc 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
